| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is dcp [H]
Identifier: 75675119
GI number: 75675119
Start: 1013607
End: 1015685
Strand: Direct
Name: dcp [H]
Synonym: Nwi_0926
Alternate gene names: 75675119
Gene position: 1013607-1015685 (Clockwise)
Preceding gene: 75675113
Following gene: 75675121
Centisome position: 29.79
GC content: 65.46
Gene sequence:
>2079_bases ATGTCAGACACGTCTCAATCGTCGCCTGTCGTTTCCGGCTCCGGTACGGACAACCCGCTGCTGATGCCGTGGCGGACGCC TTTCCAGGCCCCGCCGTTCGGGGAGATCGCGCCTGACCACTTCCTGCCCGCCTTTGAGCGAGCGTTCATCGATCATGCCG CCGAGATCGCCGCCATCGCCCATGATCCGTCGGCGCCGGACTTCGCCAACACCATCACCGCGCTGGAACGCTGCGGCAGG CTGCTCGCGAAGGTCTCGGCCGTGTTTTACAATCTGGTGTCGGCGCACTCCAATCCGGCGCTGCTCGAGATCGACAAGGA TGTCTCCTCGCGCATGGCGCGGCACTGGAATCCGATCCTGATGAACGCGGTGTTGTTCGGCCGCGTCGCGCAGCTCCACG AGAATCGCGCAACGCTCGGACTGACCGCCGAACAGTCCCGGCTGCTGGAACGCACCTACACGCGCTTCCACCGGGCCGGC GCGGGTCTCGACGAGACCGCGAAGGCGCGGATGGCCACGATCAACGAACGGTTGGCCGATCTCGGCACCACCTTCGGCCA TCATCTCCTCGGCGACGAGCAGGAGTGGTTCCTCGAACTCGGCGAGGACGACATGGACGGCCTGCCGGACAGCTTCGTTG CCGCGGCGCGCGCCGCGGCGGAGGAGCGCGCGCTGCCCGGCAAGGCCATCGTGACCACCTCGCGCTCATCAGTGGAGACC TTTCTCAAGAGCTCGCGCCGCCGCGATCTGCGCGAGAAGGTTTACAAGGCGTTCACCGCCCGCGGCGACAACGGCAACGC CAACGACAACAACGCGGCCATCGTGGAGATCCTCGCGCTTCGCGAGGAGGCTGCACGGCTTCTGGGCTATCCCGCTTTCG CCGCCTATCGTCTGGAAGACTCGATGGCCAAGACGCCGGAAGCCGCGCGCGGCCTGCTGGAGCGGGTGTGGACGCCGGCC CGCGCGCGGGCGCTCGCCGATCGCGATGCCTTGCAGGGGCTGATCGCGGAGGAGGGCGGCAACTTCACCCTCGCGCCCTG GGACTGGCGCTACTACGCCGAAAAACTGCGGCAGATCCGTGCCGATTTCGACGACGCGGCGATCAAGCCGTATCTGACGC TGGAGGGGATGATCGCCGCGGCCTTCGACTGCGCGCACCGGCTGTTCGGACTCACCTTCTCCGAGCGCAAGGACATCCCG GTCTGGCATCCGGACGTCCGCGTCTTTGAGGTGAAGGATGAGGCCGGCGCGCATCGGGCGCTGTTCTACGGCGACTACTT CGCCCGCGCATCGAAACGGTCCGGCGCATGGATGACCTCGCTGCGCGACCAGCAGACGCTCGACGGTGAGATCGCGCCGC TGGTCGTGAACGTCTGCAATTTCGCCAAAGGCGCGGACGGCCAGCCCGCGCTGCTGTCTCCGGACGATGCGCGCACGCTG TTCCATGAGTTCGGACATGGTCTGCACGGCATGCTGTCGAACGTCACCTATCCTTCGTTGTCGGGGACCAGCGTGTTTAC CGATTTCGTCGAACTGCCCTCGCAACTCTACGAGCACTGGCAGGAACAGCCGCAGGTGCTGCGACAGTTCGCAAGGCACT ACCAGACCGGAGAACCGCCGCCGGACGATCTGCTGGAGCGTTTCCTTGCGGCGCGACAGTTCAACCAGGGTTTCGCCACC GTCGAATTCGTCGCTTCGGCGCTGATGGATCTGGAATTTCACAGCCAACCCGCCGCGGCGATCCGCGATGTCAGGGCTTT CGAACGCGCCACCATGGGAAAGATCGGGATGCCGGCGGAAATCGCGATGCGGCACCGGCCGACTCAGTTCGGCCACATCT TCTCCGGCGATCACTATGCGGCCGGCTATTACAGCTACATGTGGTCGGAGGTGATGGACGCCGATGCGTTCGGGGCTTTC GAGGAGACCGGCGATATTTTCGATCCGGAGACCGCAAGGCGGCTGCACGATGATATTTACTCGTCGGGCGGATCGCGCGA TCCGGAAGAAGCCTACATCGCCTTCCGCGGCCGCGGGCCGAAGCCGGAGGCGCTGTTGCGGCGACGTGGATTGCTATAG
Upstream 100 bases:
>100_bases CAAGCGTCAAAGGCACCAAAGGGTTCTGTCGCGTGTTATAAGTTCCAGTGCCGCTGGATCGCGGCAAAAATGTGCAGCAG CGGGCGAAAGCAAAAATATT
Downstream 100 bases:
>100_bases CGTTTTCGAGCGAAGTGGAAACCGGTTCGCGTGAAGAAACGCGTCAGAACAAGATCATAGAGCCTCGCTTCTGATTCCAT CAGAAGCGAAAAGGCTCTAG
Product: peptidase M3A and M3B, thimet/oligopeptidase F
Products: NA
Alternate protein names: Dipeptidyl carboxypeptidase [H]
Number of amino acids: Translated: 692; Mature: 691
Protein sequence:
>692_residues MSDTSQSSPVVSGSGTDNPLLMPWRTPFQAPPFGEIAPDHFLPAFERAFIDHAAEIAAIAHDPSAPDFANTITALERCGR LLAKVSAVFYNLVSAHSNPALLEIDKDVSSRMARHWNPILMNAVLFGRVAQLHENRATLGLTAEQSRLLERTYTRFHRAG AGLDETAKARMATINERLADLGTTFGHHLLGDEQEWFLELGEDDMDGLPDSFVAAARAAAEERALPGKAIVTTSRSSVET FLKSSRRRDLREKVYKAFTARGDNGNANDNNAAIVEILALREEAARLLGYPAFAAYRLEDSMAKTPEAARGLLERVWTPA RARALADRDALQGLIAEEGGNFTLAPWDWRYYAEKLRQIRADFDDAAIKPYLTLEGMIAAAFDCAHRLFGLTFSERKDIP VWHPDVRVFEVKDEAGAHRALFYGDYFARASKRSGAWMTSLRDQQTLDGEIAPLVVNVCNFAKGADGQPALLSPDDARTL FHEFGHGLHGMLSNVTYPSLSGTSVFTDFVELPSQLYEHWQEQPQVLRQFARHYQTGEPPPDDLLERFLAARQFNQGFAT VEFVASALMDLEFHSQPAAAIRDVRAFERATMGKIGMPAEIAMRHRPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAF EETGDIFDPETARRLHDDIYSSGGSRDPEEAYIAFRGRGPKPEALLRRRGLL
Sequences:
>Translated_692_residues MSDTSQSSPVVSGSGTDNPLLMPWRTPFQAPPFGEIAPDHFLPAFERAFIDHAAEIAAIAHDPSAPDFANTITALERCGR LLAKVSAVFYNLVSAHSNPALLEIDKDVSSRMARHWNPILMNAVLFGRVAQLHENRATLGLTAEQSRLLERTYTRFHRAG AGLDETAKARMATINERLADLGTTFGHHLLGDEQEWFLELGEDDMDGLPDSFVAAARAAAEERALPGKAIVTTSRSSVET FLKSSRRRDLREKVYKAFTARGDNGNANDNNAAIVEILALREEAARLLGYPAFAAYRLEDSMAKTPEAARGLLERVWTPA RARALADRDALQGLIAEEGGNFTLAPWDWRYYAEKLRQIRADFDDAAIKPYLTLEGMIAAAFDCAHRLFGLTFSERKDIP VWHPDVRVFEVKDEAGAHRALFYGDYFARASKRSGAWMTSLRDQQTLDGEIAPLVVNVCNFAKGADGQPALLSPDDARTL FHEFGHGLHGMLSNVTYPSLSGTSVFTDFVELPSQLYEHWQEQPQVLRQFARHYQTGEPPPDDLLERFLAARQFNQGFAT VEFVASALMDLEFHSQPAAAIRDVRAFERATMGKIGMPAEIAMRHRPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAF EETGDIFDPETARRLHDDIYSSGGSRDPEEAYIAFRGRGPKPEALLRRRGLL >Mature_691_residues SDTSQSSPVVSGSGTDNPLLMPWRTPFQAPPFGEIAPDHFLPAFERAFIDHAAEIAAIAHDPSAPDFANTITALERCGRL LAKVSAVFYNLVSAHSNPALLEIDKDVSSRMARHWNPILMNAVLFGRVAQLHENRATLGLTAEQSRLLERTYTRFHRAGA GLDETAKARMATINERLADLGTTFGHHLLGDEQEWFLELGEDDMDGLPDSFVAAARAAAEERALPGKAIVTTSRSSVETF LKSSRRRDLREKVYKAFTARGDNGNANDNNAAIVEILALREEAARLLGYPAFAAYRLEDSMAKTPEAARGLLERVWTPAR ARALADRDALQGLIAEEGGNFTLAPWDWRYYAEKLRQIRADFDDAAIKPYLTLEGMIAAAFDCAHRLFGLTFSERKDIPV WHPDVRVFEVKDEAGAHRALFYGDYFARASKRSGAWMTSLRDQQTLDGEIAPLVVNVCNFAKGADGQPALLSPDDARTLF HEFGHGLHGMLSNVTYPSLSGTSVFTDFVELPSQLYEHWQEQPQVLRQFARHYQTGEPPPDDLLERFLAARQFNQGFATV EFVASALMDLEFHSQPAAAIRDVRAFERATMGKIGMPAEIAMRHRPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAFE ETGDIFDPETARRLHDDIYSSGGSRDPEEAYIAFRGRGPKPEALLRRRGLL
Specific function: Removes dipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides [H]
COG id: COG0339
COG function: function code E; Zn-dependent oligopeptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3 family [H]
Homologues:
Organism=Homo sapiens, GI14149738, Length=637, Percent_Identity=28.2574568288854, Blast_Score=236, Evalue=8e-62, Organism=Homo sapiens, GI4507491, Length=582, Percent_Identity=30.4123711340206, Blast_Score=234, Evalue=2e-61, Organism=Homo sapiens, GI156105687, Length=641, Percent_Identity=25.7410296411856, Blast_Score=177, Evalue=4e-44, Organism=Escherichia coli, GI1787819, Length=681, Percent_Identity=41.2628487518355, Blast_Score=493, Evalue=1e-140, Organism=Escherichia coli, GI1789913, Length=686, Percent_Identity=33.9650145772595, Blast_Score=364, Evalue=1e-102, Organism=Caenorhabditis elegans, GI32565901, Length=589, Percent_Identity=24.4482173174873, Blast_Score=96, Evalue=8e-20, Organism=Saccharomyces cerevisiae, GI6319793, Length=618, Percent_Identity=26.8608414239482, Blast_Score=197, Evalue=6e-51, Organism=Saccharomyces cerevisiae, GI6322715, Length=705, Percent_Identity=22.5531914893617, Blast_Score=143, Evalue=8e-35, Organism=Drosophila melanogaster, GI21356111, Length=491, Percent_Identity=26.4765784114053, Blast_Score=172, Evalue=9e-43, Organism=Drosophila melanogaster, GI20129717, Length=554, Percent_Identity=25.812274368231, Blast_Score=149, Evalue=7e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 [H]
Pfam domain/function: PF01432 Peptidase_M3 [H]
EC number: =3.4.15.5 [H]
Molecular weight: Translated: 76993; Mature: 76862
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTSQSSPVVSGSGTDNPLLMPWRTPFQAPPFGEIAPDHFLPAFERAFIDHAAEIAAIA CCCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH HDPSAPDFANTITALERCGRLLAKVSAVFYNLVSAHSNPALLEIDKDVSSRMARHWNPIL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCHHH MNAVLFGRVAQLHENRATLGLTAEQSRLLERTYTRFHRAGAGLDETAKARMATINERLAD HHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LGTTFGHHLLGDEQEWFLELGEDDMDGLPDSFVAAARAAAEERALPGKAIVTTSRSSVET HHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH FLKSSRRRDLREKVYKAFTARGDNGNANDNNAAIVEILALREEAARLLGYPAFAAYRLED HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH SMAKTPEAARGLLERVWTPARARALADRDALQGLIAEEGGNFTLAPWDWRYYAEKLRQIR HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHH ADFDDAAIKPYLTLEGMIAAAFDCAHRLFGLTFSERKDIPVWHPDVRVFEVKDEAGAHRA HCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEEEECCCCCCCCE LFYGDYFARASKRSGAWMTSLRDQQTLDGEIAPLVVNVCNFAKGADGQPALLSPDDARTL EEEHHHHHHHCCCCCCHHHHHCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH FHEFGHGLHGMLSNVTYPSLSGTSVFTDFVELPSQLYEHWQEQPQVLRQFARHYQTGEPP HHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PDDLLERFLAARQFNQGFATVEFVASALMDLEFHSQPAAAIRDVRAFERATMGKIGMPAE HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHH IAMRHRPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAFEETGDIFDPETARRLHDDIY HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHH SSGGSRDPEEAYIAFRGRGPKPEALLRRRGLL HCCCCCCCHHCEEEEECCCCCHHHHHHHCCCC >Mature Secondary Structure SDTSQSSPVVSGSGTDNPLLMPWRTPFQAPPFGEIAPDHFLPAFERAFIDHAAEIAAIA CCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH HDPSAPDFANTITALERCGRLLAKVSAVFYNLVSAHSNPALLEIDKDVSSRMARHWNPIL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCHHH MNAVLFGRVAQLHENRATLGLTAEQSRLLERTYTRFHRAGAGLDETAKARMATINERLAD HHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH LGTTFGHHLLGDEQEWFLELGEDDMDGLPDSFVAAARAAAEERALPGKAIVTTSRSSVET HHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH FLKSSRRRDLREKVYKAFTARGDNGNANDNNAAIVEILALREEAARLLGYPAFAAYRLED HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH SMAKTPEAARGLLERVWTPARARALADRDALQGLIAEEGGNFTLAPWDWRYYAEKLRQIR HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHH ADFDDAAIKPYLTLEGMIAAAFDCAHRLFGLTFSERKDIPVWHPDVRVFEVKDEAGAHRA HCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCEEEEECCCCCCCCE LFYGDYFARASKRSGAWMTSLRDQQTLDGEIAPLVVNVCNFAKGADGQPALLSPDDARTL EEEHHHHHHHCCCCCCHHHHHCHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH FHEFGHGLHGMLSNVTYPSLSGTSVFTDFVELPSQLYEHWQEQPQVLRQFARHYQTGEPP HHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PDDLLERFLAARQFNQGFATVEFVASALMDLEFHSQPAAAIRDVRAFERATMGKIGMPAE HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHH IAMRHRPTQFGHIFSGDHYAAGYYSYMWSEVMDADAFGAFEETGDIFDPETARRLHDDIY HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHH SSGGSRDPEEAYIAFRGRGPKPEALLRRRGLL HCCCCCCCHHCEEEEECCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226676; 9097039; 9278503 [H]