| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is lldD [H]
Identifier: 75674899
GI number: 75674899
Start: 784074
End: 785183
Strand: Direct
Name: lldD [H]
Synonym: Nwi_0702
Alternate gene names: 75674899
Gene position: 784074-785183 (Clockwise)
Preceding gene: 75674898
Following gene: 75674900
Centisome position: 23.05
GC content: 67.66
Gene sequence:
>1110_bases ATGACCACGCCGCTTGCCAAGCTCACGCAGATTCCGCCGACGGTCGCGGCGGTTGCCGACTACGAGGTGCTGGCGCGTGA GCGTGTGTCGCCTGGAGCCTGGGCCTATCTCGACGGCGGCGCGGCGGACGAGGTGACCGCGCGGGAAAATCGCGCGGCGT TCGCTCGTCTGCACTTGCGCACACGGGTTTTGCGCGATCTCTCCAGCGGAAACACGGCTTGCGAGTTGTTTGGCACGCGG CTGCGTGCGCCGATCCTGCTCGCACCTGTCGCCTACCAGAAGCTCGCATATCCGGATGGCGAACTCGCCACCGTGCTCGG CGCTTCGGCGATGCGGATGGCGATGGTGGTCAGCACGCAGGCGAGCGTCGCTCTGGAGGAGATCGCGCGGGAAGCGCAGA CGCCGCTGTGGTTTCAACTCTACATCCAGCACGACCGCGACTTCACGCTTCGTCTCGTGCGCCGCGCGGAATCCGCCGGC ATTCGCGCGCTGGTGGTGAGCGTCGATGCGCCGATCAGCGGCCTGCGTAACCGCGAGCAGCGCATGGGCTTCGCTTTTCC GGGCGGCATCGAGCCGGTCAATCTGCGCGGCCTGACGCCCTCGCCGCGAGCCGCCGGCGAGACGCTGTTCGATAGTCCGC TGATAACCAGGGCCGCGACCTGGCGCGACATCGAGAATCTGCGCGAAGCGACCAAGCTACCGCTGGTGCTCAAGGGCATC ATGACGGCGGAGGACGCCGAGCAGGCTCTTGCGGCCGGCGTCGATGGTCTCATCGTCTCCAACCACGGAGGGCGGGTGCT TGATGGTCAACCCGCGACCATCGAGGTGCTTCCGGAGATCGCGGCCGCCGTATCCGGCCGCGTACCGATCCTGCTCGACG GCGGGATCCGGCGCGGCGGCGATGTCTTCAAGGCGCTGGCGCTCGGCGCCAGTGCGGTGCTGGTCGGCCGTGCCTTCGTT CATGGGTTGGCCGCGGCGGGCGCGGTAGGCGTTGCCCATGTGCTGCGCATCCTGCATGCCGAGTTGGAAGCGACCATGGT GCTCACCGGCTGCCGGGATATCCGTGCGATTTCTCCGGCGTCAATCCGGCAAGCAGGACTGCGTACGTAG
Upstream 100 bases:
>100_bases GCTTCCGGTCAAATCAGAAGCGGGCTCTATGATTTTGATTTGACGCGCTTTCTTCACGCAAACCGGTATCCACTTCGTTC GAAAACGCTATAACACCACG
Downstream 100 bases:
>100_bases TGGGTTGGTTCAAAAGTTCGCTTTCATTTTCAGCGCGTCCTCCGAACGAACGTCTCACACCCGATGGATCATCTGGATAA TCGCTCAGTTCCGATCGCTA
Product: FMN-dependent alpha-hydroxy acid dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MTTPLAKLTQIPPTVAAVADYEVLARERVSPGAWAYLDGGAADEVTARENRAAFARLHLRTRVLRDLSSGNTACELFGTR LRAPILLAPVAYQKLAYPDGELATVLGASAMRMAMVVSTQASVALEEIAREAQTPLWFQLYIQHDRDFTLRLVRRAESAG IRALVVSVDAPISGLRNREQRMGFAFPGGIEPVNLRGLTPSPRAAGETLFDSPLITRAATWRDIENLREATKLPLVLKGI MTAEDAEQALAAGVDGLIVSNHGGRVLDGQPATIEVLPEIAAAVSGRVPILLDGGIRRGGDVFKALALGASAVLVGRAFV HGLAAAGAVGVAHVLRILHAELEATMVLTGCRDIRAISPASIRQAGLRT
Sequences:
>Translated_369_residues MTTPLAKLTQIPPTVAAVADYEVLARERVSPGAWAYLDGGAADEVTARENRAAFARLHLRTRVLRDLSSGNTACELFGTR LRAPILLAPVAYQKLAYPDGELATVLGASAMRMAMVVSTQASVALEEIAREAQTPLWFQLYIQHDRDFTLRLVRRAESAG IRALVVSVDAPISGLRNREQRMGFAFPGGIEPVNLRGLTPSPRAAGETLFDSPLITRAATWRDIENLREATKLPLVLKGI MTAEDAEQALAAGVDGLIVSNHGGRVLDGQPATIEVLPEIAAAVSGRVPILLDGGIRRGGDVFKALALGASAVLVGRAFV HGLAAAGAVGVAHVLRILHAELEATMVLTGCRDIRAISPASIRQAGLRT >Mature_368_residues TTPLAKLTQIPPTVAAVADYEVLARERVSPGAWAYLDGGAADEVTARENRAAFARLHLRTRVLRDLSSGNTACELFGTRL RAPILLAPVAYQKLAYPDGELATVLGASAMRMAMVVSTQASVALEEIAREAQTPLWFQLYIQHDRDFTLRLVRRAESAGI RALVVSVDAPISGLRNREQRMGFAFPGGIEPVNLRGLTPSPRAAGETLFDSPLITRAATWRDIENLREATKLPLVLKGIM TAEDAEQALAAGVDGLIVSNHGGRVLDGQPATIEVLPEIAAAVSGRVPILLDGGIRRGGDVFKALALGASAVLVGRAFVH GLAAAGAVGVAHVLRILHAELEATMVLTGCRDIRAISPASIRQAGLRT
Specific function: Unknown
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FMN hydroxy acid dehydrogenase domain [H]
Homologues:
Organism=Homo sapiens, GI11068137, Length=363, Percent_Identity=41.0468319559229, Blast_Score=270, Evalue=2e-72, Organism=Homo sapiens, GI54234014, Length=346, Percent_Identity=40.1734104046243, Blast_Score=263, Evalue=1e-70, Organism=Homo sapiens, GI7705393, Length=346, Percent_Identity=40.1734104046243, Blast_Score=263, Evalue=1e-70, Organism=Escherichia coli, GI1790033, Length=380, Percent_Identity=35.5263157894737, Blast_Score=223, Evalue=1e-59, Organism=Caenorhabditis elegans, GI193208036, Length=356, Percent_Identity=39.3258426966292, Blast_Score=257, Evalue=8e-69, Organism=Caenorhabditis elegans, GI32566217, Length=273, Percent_Identity=36.996336996337, Blast_Score=180, Evalue=9e-46, Organism=Saccharomyces cerevisiae, GI6323587, Length=366, Percent_Identity=35.792349726776, Blast_Score=228, Evalue=1e-60, Organism=Drosophila melanogaster, GI281363140, Length=355, Percent_Identity=42.2535211267606, Blast_Score=254, Evalue=9e-68, Organism=Drosophila melanogaster, GI78707190, Length=355, Percent_Identity=42.2535211267606, Blast_Score=254, Evalue=9e-68, Organism=Drosophila melanogaster, GI78707188, Length=355, Percent_Identity=42.2535211267606, Blast_Score=254, Evalue=1e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR012133 - InterPro: IPR000262 - InterPro: IPR008259 - InterPro: IPR020920 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =1.1.2.3 [H]
Molecular weight: Translated: 39160; Mature: 39029
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPLAKLTQIPPTVAAVADYEVLARERVSPGAWAYLDGGAADEVTARENRAAFARLHLR CCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH TRVLRDLSSGNTACELFGTRLRAPILLAPVAYQKLAYPDGELATVLGASAMRMAMVVSTQ HHHHHHHCCCCCCHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH ASVALEEIAREAQTPLWFQLYIQHDRDFTLRLVRRAESAGIRALVVSVDAPISGLRNREQ HHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHH RMGFAFPGGIEPVNLRGLTPSPRAAGETLFDSPLITRAATWRDIENLREATKLPLVLKGI HCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH MTAEDAEQALAAGVDGLIVSNHGGRVLDGQPATIEVLPEIAAAVSGRVPILLDGGIRRGG HHHHHHHHHHHCCCCEEEEECCCCEEECCCCCEEHHHHHHHHHHCCCCCEEECCCCCCCH DVFKALALGASAVLVGRAFVHGLAAAGAVGVAHVLRILHAELEATMVLTGCRDIRAISPA HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHCCCCCH SIRQAGLRT HHHHCCCCC >Mature Secondary Structure TTPLAKLTQIPPTVAAVADYEVLARERVSPGAWAYLDGGAADEVTARENRAAFARLHLR CCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH TRVLRDLSSGNTACELFGTRLRAPILLAPVAYQKLAYPDGELATVLGASAMRMAMVVSTQ HHHHHHHCCCCCCHHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH ASVALEEIAREAQTPLWFQLYIQHDRDFTLRLVRRAESAGIRALVVSVDAPISGLRNREQ HHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHH RMGFAFPGGIEPVNLRGLTPSPRAAGETLFDSPLITRAATWRDIENLREATKLPLVLKGI HCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH MTAEDAEQALAAGVDGLIVSNHGGRVLDGQPATIEVLPEIAAAVSGRVPILLDGGIRRGG HHHHHHHHHHHCCCCEEEEECCCCEEECCCCCEEHHHHHHHHHHCCCCCEEECCCCCCCH DVFKALALGASAVLVGRAFVHGLAAAGAVGVAHVLRILHAELEATMVLTGCRDIRAISPA HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHCCCCCH SIRQAGLRT HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA