| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is polA [H]
Identifier: 74318471
GI number: 74318471
Start: 2522451
End: 2525174
Strand: Direct
Name: polA [H]
Synonym: Tbd_2453
Alternate gene names: 74318471
Gene position: 2522451-2525174 (Clockwise)
Preceding gene: 74318467
Following gene: 74318474
Centisome position: 86.69
GC content: 67.51
Gene sequence:
>2724_bases GTGAACGATCCTAGTGTAAGTCAGCCCGGCAAGACCCTGTTGTTGGTGGACGGCTCGTCCTATCTGTACCGCGCCTTTCA TGCGCTGCCGGACCTGCGCAACGCGGCGGGCGAACCGACCAGTGCGATCAAGGGCGTTCTCGCCATGCTGCACAGGCTGC GCAAGGATTACGCGGCCGATTATATCGCCTGCGTGTTCGACGCGAAGGGCAAGACCTTCCGCGACGATCTCTATCCTGCG TACAAGGCGAACCGCCCGGCGATGCCGGACGATCTGCGCAGCCAGATCGAACCTCTGCACGAGGCCATCCGCGCCGAGGG CTGGCCGCTCGTCGTCATCGACGGCGTCGAGGCGGACGACGTGATCGGCACACTCGTGCGCCACGCCGCACAAAAAGGCA TCCGCAGCATCGTCTCGACCGGCGACAAGGACATGGCCCAGCTCGTCGACGGCCACGTCACGCTCGTCAACACCATGAGC CTCGAGACGCTCGACGAAGCCGGCGTCGTCGCCAAGTTCGGCGTGGCGCCCGACCGCATCATCGACTACCTCACGCTCGT CGGCGACGCGGTCGACAACGTGCCCGGGGTCGCCAAATGCGGGCCGAAGACCGCCGCGAAATGGCTCGCCGAATACGGCA CGCTCGACAACCTGCTCGCCCACGCCGACGCGGTCAAAGGCGCGGTCGGAGAGAACCTGCGCGCGGTCGTCGACTGGCTG CCGCAGGCCCGCGCGCTGCTCACGATCAAGACCGACGTCGCGCTGCCCTTCGATTTCGACGACCTCGTGCTGAAGCCGCG CGACATCGACGCCCTGCGCGGGCTGTTCGAGCGCTACGAATTCCGTACCTGGCTGCGCGAACTCGACGCCTCGCCGGCGA CGGCCGTTTCGTCCGAACCCGACTGCAGCGGATCGCACCGCGCCGGCTACGAGATCATCCTGAGCGAAGCGCAGCTCGAC GCCTGGGTCGCGCGGGTCGCGACCGCCGACGCCTTCGCGCTCGACGTCGAGGCGAGCAGCGCGAGCCCGCTGCAGTGCGA ACTGATCGGCCTGGCGTTCGCGGTCTGCGAAGGCGAGGCTGCGTATCTGCCGCTCGGCCACCATTACGCCGGCGCGCCGG CGCAGCTCTCGCGCGCCGCGGCTTTCGCCAGAATCAAGCCCCTGCTCGAGGAGCGCGCGGCGAAAATCGTCGGCCAGAAT CTCAAATACGCGCGCCACGTGCTCGCCAACTGCGGCATCGCGCTCGGCGGCGCGGCCGACGACACGCTGCTGCAATCCTA CGTGCTCGAAGCGCATCAGCCGCACGAACTCGCGAGCCTCGCCAATCGCCATCTCGGGCTCGCGACGCTCGCCTGCGACG AACTCACCGGCAAGGGCGCGGCGCGCATCGGCTTCGATCAGGTCGCGGTCGAGCGCGCCGGCGAATACGCGGCCGAGCAG GCGGACGTCACGCTGCGCGTCCGCGGCCAGCTCGCAGCGCGCATCGCGGCGTCGGAGAAACTCGAATACGTCTACCGCGA AATCGAGCTCCCGGTTTCCGAAGTGCTCTTCCGCATGGAACGCGCGGGCGTGCTGCTCGATCGCGCGCTCCTCGCGGCGC AAAGCGGCGAGCTCGGCCGCAAGATGCTCGAACTCGAGCAACGCGCCTTCCAGGAAGCGGGCCAGCCTTTCAATCTCGGC TCGCCCAAGCAGATCGGCGACATTCTGTTCGCGCAAAAAGGCCTTCCGATCCTCAAGAAAACACCGGGAGGGGCGCCGTC GACCGACGAGGAAACGCTCGAACTGCTCGCACTCGACCACCCGATCGCGCGTGCGATCCTCGACTACCGCGGACTCGCCA AACTGAAGTCGACCTACACCGACAAGCTGCCGCAGATGGTGCATCCGTTGACCGGCCGGCTGCACACAAGCTATTCGCAG GCGACCGCGGTGACCGGCCGGCTCGCGAGCGTGGAGCCGAACCTGCAGAACATCCCGGCGCGGACGGCGGAAGGGCGCCG CATCCGTGAGGCCTTCATCGCGCCGCCCGGCCACCTGCTCGTCTCGGCCGACTATTCGCAGATCGAGCTCAGGATCATGG CGCATCTATCGGACGACGCCGGCCTGCTTCACGCCTTCGCCAACGATCTCGACATCCACACCGCGACCGCCGCCGAGGTG TTCGGCGTCCCGCTCGACGCGGTCAGCGCCGAGCAGCGCCGGATCGCCAAGGTCATCAATTTCGGCCTGATCTACGGCAT GTCGGCCTTCGGCCTGGCGAGCCAGCTCAATCTCGAGCGCAGCGCCGCGCAGGCGTGGATCGACCGTTACTTCACGCGCT ATCCCGGCGTCGCGAACTACATGCTGCGCACCCGCGAATCGGCGCGCGCGCAGGGCTACGTCGAGACCGTCTTCGGCCGC CGCCTCTATCTCCCTGAAATCAACGCGAGGAATCCGCAACGCCGACAAGGCGCCGAACGCGCCGCGATCAATGCGCCGAT GCAGGGCACGGCCGCCGACCTCATCAAGCTGGCGATGATCGCAGTGCAGCGGTGGATCGACAGCGAAAGACTCGGCACGC GCCTACTGCTGCAGGTCCACGACGAACTGATCCTCGAGGTGCCTGAACACGAGCTCGAACGCGTCCGCGCCGAACTGCCG TCGCACATGTGCGACGTCGCCGCGCTCAAGGTACCGCTGCGGGTCGGCGTCGGCGTCGGCGGCAACTGGGAAGCGGCGCA CTGA
Upstream 100 bases:
>100_bases AGCATCCGCCAGGACTCGCGCGCCGAGTAATTGGTCTCGGCGGTGCGCCCCGGGTCAACCGCTGCGGGCAATTTATCCAA ATGCATTTTTCGAGCGCCTC
Downstream 100 bases:
>100_bases GCGTCCTGTCTCGCCCATGAAAAACGGGCGCCGCGAGCGCCCGTTTTTTTTAGCAGCCAGGTGGCTACTGCGGCACGAGT TCCACGCGGCGGTTCTGCGC
Product: DNA polymerase I
Products: NA
Alternate protein names: POL I [H]
Number of amino acids: Translated: 907; Mature: 907
Protein sequence:
>907_residues MNDPSVSQPGKTLLLVDGSSYLYRAFHALPDLRNAAGEPTSAIKGVLAMLHRLRKDYAADYIACVFDAKGKTFRDDLYPA YKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADDVIGTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMS LETLDEAGVVAKFGVAPDRIIDYLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVGENLRAVVDWL PQARALLTIKTDVALPFDFDDLVLKPRDIDALRGLFERYEFRTWLRELDASPATAVSSEPDCSGSHRAGYEIILSEAQLD AWVARVATADAFALDVEASSASPLQCELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAAFARIKPLLEERAAKIVGQN LKYARHVLANCGIALGGAADDTLLQSYVLEAHQPHELASLANRHLGLATLACDELTGKGAARIGFDQVAVERAGEYAAEQ ADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQRAFQEAGQPFNLG SPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQ ATAVTGRLASVEPNLQNIPARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTATAAEV FGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYFTRYPGVANYMLRTRESARAQGYVETVFGR RLYLPEINARNPQRRQGAERAAINAPMQGTAADLIKLAMIAVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELP SHMCDVAALKVPLRVGVGVGGNWEAAH
Sequences:
>Translated_907_residues MNDPSVSQPGKTLLLVDGSSYLYRAFHALPDLRNAAGEPTSAIKGVLAMLHRLRKDYAADYIACVFDAKGKTFRDDLYPA YKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADDVIGTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMS LETLDEAGVVAKFGVAPDRIIDYLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVGENLRAVVDWL PQARALLTIKTDVALPFDFDDLVLKPRDIDALRGLFERYEFRTWLRELDASPATAVSSEPDCSGSHRAGYEIILSEAQLD AWVARVATADAFALDVEASSASPLQCELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAAFARIKPLLEERAAKIVGQN LKYARHVLANCGIALGGAADDTLLQSYVLEAHQPHELASLANRHLGLATLACDELTGKGAARIGFDQVAVERAGEYAAEQ ADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQRAFQEAGQPFNLG SPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQ ATAVTGRLASVEPNLQNIPARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTATAAEV FGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYFTRYPGVANYMLRTRESARAQGYVETVFGR RLYLPEINARNPQRRQGAERAAINAPMQGTAADLIKLAMIAVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELP SHMCDVAALKVPLRVGVGVGGNWEAAH >Mature_907_residues MNDPSVSQPGKTLLLVDGSSYLYRAFHALPDLRNAAGEPTSAIKGVLAMLHRLRKDYAADYIACVFDAKGKTFRDDLYPA YKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADDVIGTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMS LETLDEAGVVAKFGVAPDRIIDYLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVGENLRAVVDWL PQARALLTIKTDVALPFDFDDLVLKPRDIDALRGLFERYEFRTWLRELDASPATAVSSEPDCSGSHRAGYEIILSEAQLD AWVARVATADAFALDVEASSASPLQCELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAAFARIKPLLEERAAKIVGQN LKYARHVLANCGIALGGAADDTLLQSYVLEAHQPHELASLANRHLGLATLACDELTGKGAARIGFDQVAVERAGEYAAEQ ADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQRAFQEAGQPFNLG SPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDHPIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQ ATAVTGRLASVEPNLQNIPARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTATAAEV FGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYFTRYPGVANYMLRTRESARAQGYVETVFGR RLYLPEINARNPQRRQGAERAAINAPMQGTAADLIKLAMIAVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELP SHMCDVAALKVPLRVGVGVGGNWEAAH
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity [H]
COG id: COG0749
COG function: function code L; DNA polymerase I - 3'-5' exonuclease and polymerase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 5'-3' exonuclease domain [H]
Homologues:
Organism=Homo sapiens, GI139394648, Length=622, Percent_Identity=26.6881028938907, Blast_Score=212, Evalue=1e-54, Organism=Homo sapiens, GI112420958, Length=435, Percent_Identity=31.4942528735632, Blast_Score=202, Evalue=2e-51, Organism=Escherichia coli, GI1790294, Length=927, Percent_Identity=52.4271844660194, Blast_Score=901, Evalue=0.0, Organism=Escherichia coli, GI226510970, Length=254, Percent_Identity=28.740157480315, Blast_Score=99, Evalue=1e-21, Organism=Caenorhabditis elegans, GI86563272, Length=408, Percent_Identity=29.656862745098, Blast_Score=196, Evalue=3e-50, Organism=Drosophila melanogaster, GI17933644, Length=481, Percent_Identity=31.1850311850312, Blast_Score=205, Evalue=1e-52,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002562 - InterPro: IPR020046 - InterPro: IPR020045 - InterPro: IPR002421 - InterPro: IPR020047 - InterPro: IPR019760 - InterPro: IPR001098 - InterPro: IPR018320 - InterPro: IPR002298 - InterPro: IPR008918 - InterPro: IPR012337 [H]
Pfam domain/function: PF01612 3_5_exonuc; PF01367 5_3_exonuc; PF02739 5_3_exonuc_N; PF00476 DNA_pol_A [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 98571; Mature: 98571
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: PS00447 DNA_POLYMERASE_A
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDPSVSQPGKTLLLVDGSSYLYRAFHALPDLRNAAGEPTSAIKGVLAMLHRLRKDYAAD CCCCCCCCCCCEEEEECCCHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH YIACVFDAKGKTFRDDLYPAYKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADD HEEEEECCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH VIGTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMSLETLDEAGVVAKFGVAPDRI HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEHHHHHHHHCCCEEECCCCHHHH IDYLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVGENLRAVVDWL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHC PQARALLTIKTDVALPFDFDDLVLKPRDIDALRGLFERYEFRTWLRELDASPATAVSSEP CCCCEEEEEEECEECCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC DCSGSHRAGYEIILSEAQLDAWVARVATADAFALDVEASSASPLQCELIGLAFAVCEGEA CCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCE AYLPLGHHYAGAPAQLSRAAAFARIKPLLEERAAKIVGQNLKYARHVLANCGIALGGAAD EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCH DTLLQSYVLEAHQPHELASLANRHLGLATLACDELTGKGAARIGFDQVAVERAGEYAAEQ HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHC ADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGR CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH KMLELEQRAFQEAGQPFNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDH HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHCC PIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATAVTGRLASVEPNLQNIPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHCCCCCHHHCCC RTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTATAAEV CCCCCHHHHHHHCCCCCCEEEECCCHHEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHH FGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYFTRYPGVANY HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH MLRTRESARAQGYVETVFGRRLYLPEINARNPQRRQGAERAAINAPMQGTAADLIKLAMI HHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHCHHHHHCCCCCCCHHHHHHHHHHH AVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELPSHMCDVAALKVPLRVGVGVG HHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCC GNWEAAH CCCCCCC >Mature Secondary Structure MNDPSVSQPGKTLLLVDGSSYLYRAFHALPDLRNAAGEPTSAIKGVLAMLHRLRKDYAAD CCCCCCCCCCCEEEEECCCHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH YIACVFDAKGKTFRDDLYPAYKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADD HEEEEECCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH VIGTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMSLETLDEAGVVAKFGVAPDRI HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEEHHHHHHHHCCCEEECCCCHHHH IDYLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVGENLRAVVDWL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHC PQARALLTIKTDVALPFDFDDLVLKPRDIDALRGLFERYEFRTWLRELDASPATAVSSEP CCCCEEEEEEECEECCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC DCSGSHRAGYEIILSEAQLDAWVARVATADAFALDVEASSASPLQCELIGLAFAVCEGEA CCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCE AYLPLGHHYAGAPAQLSRAAAFARIKPLLEERAAKIVGQNLKYARHVLANCGIALGGAAD EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCH DTLLQSYVLEAHQPHELASLANRHLGLATLACDELTGKGAARIGFDQVAVERAGEYAAEQ HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHHHC ADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGR CCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH KMLELEQRAFQEAGQPFNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLALDH HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHHHHCC PIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATAVTGRLASVEPNLQNIPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHCCCCCHHHCCC RTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTATAAEV CCCCCHHHHHHHCCCCCCEEEECCCHHEEEEEEEECCCCHHHHHHHHCCCCCCHHHHHHH FGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYFTRYPGVANY HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH MLRTRESARAQGYVETVFGRRLYLPEINARNPQRRQGAERAAINAPMQGTAADLIKLAMI HHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHCHHHHHCCCCCCCHHHHHHHHHHH AVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELPSHMCDVAALKVPLRVGVGVG HHHHHHCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCCC GNWEAAH CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]