| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yhjG [H]
Identifier: 74318272
GI number: 74318272
Start: 2328534
End: 2330432
Strand: Reverse
Name: yhjG [H]
Synonym: Tbd_2254
Alternate gene names: 74318272
Gene position: 2330432-2328534 (Counterclockwise)
Preceding gene: 74318273
Following gene: 74318271
Centisome position: 80.09
GC content: 69.04
Gene sequence:
>1899_bases ATGGCGCGGCGTGCGCTGAAATGGTTCGCGATCAGCTTCGCCGTCGTCGTCGCGGCGGTCCTCATTCTTTTTGCCCTGCC GAACTGGAACGCGCTGCGTGATCCGATCGAGCGCCTCGTCGCCGAGAAAACCGGCCGCGAACTGCGCATCGGCGGCGACC TGAAGGTCCGCCTCGCATGGCCGCCGGCGATCCGGATCGGCGCCGCCGACGTCAGTTTTGCCAATCCGTCCTGGGCGGCC CAAAAGAACATGCTCGACATCGGGCAGGTCGCGTTCCACGTCGAGCTTGTCCCGCTGCTCGGCGGTGACCTGGTTTTCGC CGACGTCCGCCTCGACCGGGCCGAGGTCGATCTCGAAAAGAGCGCCGACGGTCGCAAGAACTGGCTGCTCGACCGCGAGC AGCGCGACGAGGAGGCGCGTGTCGTCGTCAAGCACGTCTCCGTGAGCGATGGCCGGGTGGCGTACAGCGACCCGGCCGCC GAAACCTCGCTGCGCGCGCGCGTCGCGACTGTGCGTCCGGACGCTGGCGAGACCACCGGCGGGCTGCGCTTCGATGTCGA GGGCCGCTACAAGGGCGAGCCGATCGTCGCCCGCGGCAGCGGTGAAAGCGTGCTCGGCCTGCGCGAACAGCAGGAGCCGT ACCGCCTCGCGGTCGCGGGGCGCGTCGGACAGACGCGCGCGAGTGCTGCAGGCCGGATCACCAATCTGCTCAAGCCCTCC GCGGTCGATCTGCAGATCAAAGTCGCGGGCGCGAGCCTCGGCCACCTCTATCCCTTGATCGGCACCGTATTTCCGCGCAC GCCGCCTTACGAAACCGCGGGTCGCCTGATCCACCGTGGCAGCCTGTGGCGTTACGAGAACTTCCGCGGCCGCGTCGGCA AGAGCGACGTCGCCGGAACCCTGCAGGTCGATCGTGCCGGCGAGCGGCCGGTACTGGCGGCGACGCTGCGTTCGGACAAG CTCGATCTCGGCGACCTCGGGCCGGTCATCGGTGGAAGCGACGAGCCGGTGGTGGATCGCGCCGGCGGCGTGCTGCCCGA CCGCCCGTTCTCGACCGAGCGCTGGCGGCGCATGGATGCCGATGTCCGGCTGACCGCAGGCGCGATCGCGCGCCCCGACG CGCTGCCGATCGACAATCTCACGACCCGGCTGCGCCTCGACAACGGCGTGCTGACGCTCGACCCGCTGAAGTTCGACGCC GCCGGCGGCACGCTCGCGGGCACGATCCGCCTCGACGGTCGACAGGGCCCGATCGAGGCGGCGGTCGACCTCGAGGCGCG CAAGATGCAACTGGCGCGCCTGTTTCCGGACGCCCGTATCAAGAAGGCGAGGGTCGGCCGGGTCAGCGGCGACTTCGACC TCGCCGGAAAGGGCGACTCGGTCGCCGAAATGCTCCGCAACGCCGACGGCAAGCTCGCGCTCGTCGTCGACGGCGGAACG GTCAGCCGTTTCATGATGGAGGCGGTCGGCCTGCATCTGCTCGAGATGCTGAAGCTCACGCTTACCGGCGACGAGATCAT CACCATCGATTGCGGCGTCGCCGATTTCGGCGTGAAAGATGGCGTCATGGAGGCGCGCAGCCTGGTGCTCGATACCGACG TCGTGCGTATCGATGGCCGCGGCACCGTCGACCTCGGCGAAGAAAGGCTCGATCTCGAGATCGTGCCGAGGTCGAAGAAA CTACGCGTCGCCTCCCTGCGTACCCCGATCCATATCGAGGGCCGTTTCGCCAAGCCCGACATCGGCCTCGACAAGGGCAA GCTCGCGCTGCGCGGGCTCGGCGCGCTCGCGCTCGGTATCGTCAACCCGGCGCTGGCGCTCGCGCCGCTGATCGAAGCGA ACACTGCGGAAGACAGCGCGTGCCGCCGCCTGATCGCCGAGGCCCGGCAGTCGCCCTGA
Upstream 100 bases:
>100_bases GGCCTGCCCGCGCTTGCGCCAGCGGTCGAAAGCCCCGGAGGCGGCGCGTGAGCGCGTCGTCGCCCTCGGCGCTTGCGCTC GACGGGCGTCAGCGGCGGCC
Downstream 100 bases:
>100_bases CCCCCGCCGAGAAAAGGGGCGCGAACATGGACGAGAACAAACCTGCCAGCCCGGTGACTGCTGCCCGCGATGCGCAGTGC GACGTTGACACGCCGGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 632; Mature: 631
Protein sequence:
>632_residues MARRALKWFAISFAVVVAAVLILFALPNWNALRDPIERLVAEKTGRELRIGGDLKVRLAWPPAIRIGAADVSFANPSWAA QKNMLDIGQVAFHVELVPLLGGDLVFADVRLDRAEVDLEKSADGRKNWLLDREQRDEEARVVVKHVSVSDGRVAYSDPAA ETSLRARVATVRPDAGETTGGLRFDVEGRYKGEPIVARGSGESVLGLREQQEPYRLAVAGRVGQTRASAAGRITNLLKPS AVDLQIKVAGASLGHLYPLIGTVFPRTPPYETAGRLIHRGSLWRYENFRGRVGKSDVAGTLQVDRAGERPVLAATLRSDK LDLGDLGPVIGGSDEPVVDRAGGVLPDRPFSTERWRRMDADVRLTAGAIARPDALPIDNLTTRLRLDNGVLTLDPLKFDA AGGTLAGTIRLDGRQGPIEAAVDLEARKMQLARLFPDARIKKARVGRVSGDFDLAGKGDSVAEMLRNADGKLALVVDGGT VSRFMMEAVGLHLLEMLKLTLTGDEIITIDCGVADFGVKDGVMEARSLVLDTDVVRIDGRGTVDLGEERLDLEIVPRSKK LRVASLRTPIHIEGRFAKPDIGLDKGKLALRGLGALALGIVNPALALAPLIEANTAEDSACRRLIAEARQSP
Sequences:
>Translated_632_residues MARRALKWFAISFAVVVAAVLILFALPNWNALRDPIERLVAEKTGRELRIGGDLKVRLAWPPAIRIGAADVSFANPSWAA QKNMLDIGQVAFHVELVPLLGGDLVFADVRLDRAEVDLEKSADGRKNWLLDREQRDEEARVVVKHVSVSDGRVAYSDPAA ETSLRARVATVRPDAGETTGGLRFDVEGRYKGEPIVARGSGESVLGLREQQEPYRLAVAGRVGQTRASAAGRITNLLKPS AVDLQIKVAGASLGHLYPLIGTVFPRTPPYETAGRLIHRGSLWRYENFRGRVGKSDVAGTLQVDRAGERPVLAATLRSDK LDLGDLGPVIGGSDEPVVDRAGGVLPDRPFSTERWRRMDADVRLTAGAIARPDALPIDNLTTRLRLDNGVLTLDPLKFDA AGGTLAGTIRLDGRQGPIEAAVDLEARKMQLARLFPDARIKKARVGRVSGDFDLAGKGDSVAEMLRNADGKLALVVDGGT VSRFMMEAVGLHLLEMLKLTLTGDEIITIDCGVADFGVKDGVMEARSLVLDTDVVRIDGRGTVDLGEERLDLEIVPRSKK LRVASLRTPIHIEGRFAKPDIGLDKGKLALRGLGALALGIVNPALALAPLIEANTAEDSACRRLIAEARQSP >Mature_631_residues ARRALKWFAISFAVVVAAVLILFALPNWNALRDPIERLVAEKTGRELRIGGDLKVRLAWPPAIRIGAADVSFANPSWAAQ KNMLDIGQVAFHVELVPLLGGDLVFADVRLDRAEVDLEKSADGRKNWLLDREQRDEEARVVVKHVSVSDGRVAYSDPAAE TSLRARVATVRPDAGETTGGLRFDVEGRYKGEPIVARGSGESVLGLREQQEPYRLAVAGRVGQTRASAAGRITNLLKPSA VDLQIKVAGASLGHLYPLIGTVFPRTPPYETAGRLIHRGSLWRYENFRGRVGKSDVAGTLQVDRAGERPVLAATLRSDKL DLGDLGPVIGGSDEPVVDRAGGVLPDRPFSTERWRRMDADVRLTAGAIARPDALPIDNLTTRLRLDNGVLTLDPLKFDAA GGTLAGTIRLDGRQGPIEAAVDLEARKMQLARLFPDARIKKARVGRVSGDFDLAGKGDSVAEMLRNADGKLALVVDGGTV SRFMMEAVGLHLLEMLKLTLTGDEIITIDCGVADFGVKDGVMEARSLVLDTDVVRIDGRGTVDLGEERLDLEIVPRSKKL RVASLRTPIHIEGRFAKPDIGLDKGKLALRGLGALALGIVNPALALAPLIEANTAEDSACRRLIAEARQSP
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI226510981, Length=675, Percent_Identity=31.2592592592593, Blast_Score=327, Evalue=2e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 68149; Mature: 68018
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARRALKWFAISFAVVVAAVLILFALPNWNALRDPIERLVAEKTGRELRIGGDLKVRLAW CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEC PPAIRIGAADVSFANPSWAAQKNMLDIGQVAFHVELVPLLGGDLVFADVRLDRAEVDLEK CCCEEEECCCCCCCCCCHHHHCCCHHHCCEEEEEEEEEECCCCEEEEEEEECHHHCCHHC SADGRKNWLLDREQRDEEARVVVKHVSVSDGRVAYSDPAAETSLRARVATVRPDAGETTG CCCCCCCCCCCCHHCCCCCEEEEEEEECCCCEEEECCCCCHHHHHEEEEEECCCCCCCCC GLRFDVEGRYKGEPIVARGSGESVLGLREQQEPYRLAVAGRVGQTRASAAGRITNLLKPS CEEEEECCCCCCCEEEEECCCCCEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC AVDLQIKVAGASLGHLYPLIGTVFPRTPPYETAGRLIHRGSLWRYENFRGRVGKSDVAGT CEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHEEECCCCEEECCCCCCCCCCCCCEE LQVDRAGERPVLAATLRSDKLDLGDLGPVIGGSDEPVVDRAGGVLPDRPFSTERWRRMDA EEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCC DVRLTAGAIARPDALPIDNLTTRLRLDNGVLTLDPLKFDAAGGTLAGTIRLDGRQGPIEA CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCCEEECCCCEEEEEEEECCCCCCCEE AVDLEARKMQLARLFPDARIKKARVGRVSGDFDLAGKGDSVAEMLRNADGKLALVVDGGT EECCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHCCCCCEEEEECCCH VSRFMMEAVGLHLLEMLKLTLTGDEIITIDCGVADFGVKDGVMEARSLVLDTDVVRIDGR HHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCCHHHHHHEEEECEEEEECCC GTVDLGEERLDLEIVPRSKKLRVASLRTPIHIEGRFAKPDIGLDKGKLALRGLGALALGI CCEECCCCCEEEEEECCCCCEEEEECCCCEEEECEECCCCCCCCCCCCHHHHHHHHHHHH VNPALALAPLIEANTAEDSACRRLIAEARQSP HCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure ARRALKWFAISFAVVVAAVLILFALPNWNALRDPIERLVAEKTGRELRIGGDLKVRLAW CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEC PPAIRIGAADVSFANPSWAAQKNMLDIGQVAFHVELVPLLGGDLVFADVRLDRAEVDLEK CCCEEEECCCCCCCCCCHHHHCCCHHHCCEEEEEEEEEECCCCEEEEEEEECHHHCCHHC SADGRKNWLLDREQRDEEARVVVKHVSVSDGRVAYSDPAAETSLRARVATVRPDAGETTG CCCCCCCCCCCCHHCCCCCEEEEEEEECCCCEEEECCCCCHHHHHEEEEEECCCCCCCCC GLRFDVEGRYKGEPIVARGSGESVLGLREQQEPYRLAVAGRVGQTRASAAGRITNLLKPS CEEEEECCCCCCCEEEEECCCCCEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCC AVDLQIKVAGASLGHLYPLIGTVFPRTPPYETAGRLIHRGSLWRYENFRGRVGKSDVAGT CEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHEEECCCCEEECCCCCCCCCCCCCEE LQVDRAGERPVLAATLRSDKLDLGDLGPVIGGSDEPVVDRAGGVLPDRPFSTERWRRMDA EEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCC DVRLTAGAIARPDALPIDNLTTRLRLDNGVLTLDPLKFDAAGGTLAGTIRLDGRQGPIEA CEEEEECCCCCCCCCCCCCCEEEEEECCCEEEECCCEEECCCCEEEEEEEECCCCCCCEE AVDLEARKMQLARLFPDARIKKARVGRVSGDFDLAGKGDSVAEMLRNADGKLALVVDGGT EECCHHHHHHHHHHCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHCCCCCEEEEECCCH VSRFMMEAVGLHLLEMLKLTLTGDEIITIDCGVADFGVKDGVMEARSLVLDTDVVRIDGR HHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCCHHHHHHEEEECEEEEECCC GTVDLGEERLDLEIVPRSKKLRVASLRTPIHIEGRFAKPDIGLDKGKLALRGLGALALGI CCEECCCCCEEEEEECCCCCEEEEECCCCEEEECEECCCCCCCCCCCCHHHHHHHHHHHH VNPALALAPLIEANTAEDSACRRLIAEARQSP HCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]