| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is bfr [C]
Identifier: 74318251
GI number: 74318251
Start: 2312526
End: 2313104
Strand: Reverse
Name: bfr [C]
Synonym: Tbd_2233
Alternate gene names: 74318251
Gene position: 2313104-2312526 (Counterclockwise)
Preceding gene: 74318252
Following gene: 74318248
Centisome position: 79.49
GC content: 66.67
Gene sequence:
>579_bases ATGAATGACACCGCGCGCCCGGCGGCGGGTACCGGCAAGGCGGAAGGGAGCACGGCCGCAGGCGGATTTCTGACCGACGT CGCGACGCTGCGGGCGCGCGCCCGCCAGCACATCGAAGCGGGCGCGGTGACCGGGGACTACGGCCTCAAGGCCGAGGCCG CGGTCGGGTTGCTCAACGCCGCCCTGGCGACCGAACTCGTCTGCACGCTGCGGTATCGCCAGCATGCGTTCGTCGCCAAG GGCATCAATTCCGAGCCGATCGCGCAGGAGTTTCTCGTCCACTCGAACGAGGAACTTGCCCACGCCGACCTGCTCGCCAA GCGCATCGTGCAACTCGGCGGTGCGCCCGAATTCAATCCGGAGTGCCTGACCTCGCTGTCCCACGCCGAATACGTGACGA GCGCGTCGCTCGAGGACATGATTCGCGAAAACCTGGTCGCGGAACGGATCGCGATCGAGAGCTACCGCGAAATGGTGCGT TATTTCGGCGAGCACGATCCGACGACGCGCGCCATGCTCGAAGGCATCCTCGCGATGGAGGAGGACCACGCCGACGAGCT GGCGGACTTGCTGCACTGA
Upstream 100 bases:
>100_bases CAAGGATATCGAGAGCGGTGGCGAAAAGATTCAGGACGCCGCTGACCGCGACAAGTAATCCGCAAACGCTGTCCGTTCAT TTCAACCCGAGGAGCAACTC
Downstream 100 bases:
>100_bases GTCCGCGCAGTCGCGCGATCCGGCCGGCGTTGTCGTTCCGAGCCGGTTAGCGCCGCAGCTCGGCTGCGGTCTCGATTGCC GTACGCGGCAGCAATACCCA
Product: putative bacterioferritin
Products: NA
Alternate protein names: Bacterioferritin; Ferritin And Dps; Ferritin-Like Domain Subfamily; Bacterioferritin-Like Domain-Containing Protein; Rubrerythrin Family Protein; RubrerythrinFerritin And Dps
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNAALATELVCTLRYRQHAFVAK GINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNPECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVR YFGEHDPTTRAMLEGILAMEEDHADELADLLH
Sequences:
>Translated_192_residues MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNAALATELVCTLRYRQHAFVAK GINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNPECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVR YFGEHDPTTRAMLEGILAMEEDHADELADLLH >Mature_192_residues MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNAALATELVCTLRYRQHAFVAK GINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNPECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVR YFGEHDPTTRAMLEGILAMEEDHADELADLLH
Specific function: May Perform Analogous Functions In Iron Detoxification And Storage To That Of Animal Ferritins. [C]
COG id: COG2193
COG function: function code P; Bacterioferritin (cytochrome b1)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 1639 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20716; Mature: 20716
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS50905 FERRITIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH ALATELVCTLRYRQHAFVAKGINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNP HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH ECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVRYFGEHDPTTRAMLEGILAME HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH EDHADELADLLH HCCHHHHHHHHC >Mature Secondary Structure MNDTARPAAGTGKAEGSTAAGGFLTDVATLRARARQHIEAGAVTGDYGLKAEAAVGLLNA CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH ALATELVCTLRYRQHAFVAKGINSEPIAQEFLVHSNEELAHADLLAKRIVQLGGAPEFNP HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCH ECLTSLSHAEYVTSASLEDMIRENLVAERIAIESYREMVRYFGEHDPTTRAMLEGILAME HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH EDHADELADLLH HCCHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA