| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yqiK [H]
Identifier: 74318236
GI number: 74318236
Start: 2296398
End: 2298074
Strand: Reverse
Name: yqiK [H]
Synonym: Tbd_2218
Alternate gene names: 74318236
Gene position: 2298074-2296398 (Counterclockwise)
Preceding gene: 74318237
Following gene: 74318235
Centisome position: 78.98
GC content: 62.13
Gene sequence:
>1677_bases ATGCTGGAAAATCTGTATCCCGCGCTCATGCTGGGGGCGGTCGTTTTGCTGGCCATTCTGGTCATTGGCATCATCATCGT GCGCCTCTACCAGCGCGCCTCGAAGGAGCTTTCTTTCGTTCGCACCGGGCTCGGCGGGCAGAAGGTGGTCATGGACGGCG GCGCGATCGTGCTGCCCGGCTTCCATCAGATCATTCCGGTCAATATGAACACGCTGAAGCTGGAGGTTGCGCGCAGCGGC AAGGACAGCTTGTTCACCAAGGATCGGATGCGGGTGGACGCGGTTGCAGCATTCTTCGTGCGGGTGCGTCCCATGCTTGA GGGCATCGCGCAGGCCGCGCAGACGCTGGGGCAACGAACAATGGACCCGACTGCACTGAAGGAGTTGATCGAGGACAAGT TCGTCGATTCGCTGCGCGCGGCAGCCGTGTCGATGACGATGCAGGAGCTGCTCGACATGCGTCAGGACTTCATACAGGCG GTGCAGAACACCGTGCAGGAAGACCTGATGAAGAACGGGCTTGAGCTGGAGTCGGTTTCGCTGACCCGGATCGACCAGAC GGCGATGCAGTTCTTCGACCCCAACAATGCCTTCGATGCCGAGGGTTTGACCAAACTCACCGAAGAAACCCAGTTGCGAG CCAAACAGCGCAATGACATCGAGCAGGACACGGCGGTGCAGATCGCCGAGAAGAACTTCATGACCAAGCAGGAGCAATTG CGCATTGCGCAGCAGCAGACTTTTGCCGTGCTCTCCCAAGAACAGGAAGTGGCCAACCGACAGGCGGAGCAGAGTGCCCA GGTGGCGGGATTCGAGGCAGCCAAGAAGCAGGAATCCGAACAGGCGCGCATCACCGCCGAGCGACAGATCAAGGAAGCCG AGGTCGAACGTGACCGCAGCGTCCAACAGCGGCAGATCGAGGCCGAACGTGGGCTGAAAGTCGCAGCGATCGAACAGCAG CGCTCGATCGAGATCGCCGAGCAGGAACGTGCGATCGCCATCGCGCAGAAATCCGAGCAGCAGTCGGTCGCCGAGGCGCA GGCCAACCTGGCGCGTGCCGAATCGGTCAAGGCGGCACAAAGCGTGGTCACCGCGGAAGAGGTGGCACGTGCCGAACGCG AAAAGCAGGTGGCGATGGTGAAGGCGGACGAAGATGCCCAGCGTCGGGCGATCGAGTTGACCGTGGCAGCCGAGGCAGAG CGGCAGGCAGCCGAAGATCGCGCACAGGCGATCCGTACGCTGGCCGAGGCGAATGCCACCAACTATGAGGTCGAAGCCGA GGGCAAGCGCAAGCTCAACGATGCCGTCAACGTGCTCTCGCCCGAGCAGATCGCGATGAACGTCAAGCTGGAATTGATCC GTGCCCTGCCCGAAATCATTGCCGCCTCGGTCAAGCCGATCGAGCGCATCGACGGCATCAAGATCATTCAGGTGGATGGG TTGAATCGCGGCAGTGCCGCCGGCGCGGCCAGTGCGGGGCTTGGCGCATCGGCTACTGGCAACCTCGCCGAGCAGGCCGT ATCGGCTGCGCTGGCCTACCGAGCGCAGCAGCCGCTGATCGACTCCCTGCTCAGCGAGGTTGGCCTCAAGGAAGGGGTGT CCGCGCGGCTGGACGCATCGCTTTTTACGCCGAACGCTTCCGTCAAGACTGAGCGCGTACCGGAGCTGGAAGAATGA
Upstream 100 bases:
>100_bases GCCGGGGAACGTGTGCTGCTGCTGCGTGAGTTGAGCGCTGGGCGCTATCAGGCCACCCCCAATCCGATCACCGAATAATC ACACCAAAGGGAGCAACACC
Downstream 100 bases:
>100_bases ATATGGAAGCGCCATTGTCCGCAGCCGGTCCCTCCATGGAGTTGTCTCCGCCAGAACTTCTCGCCCCCGTGGCCAAAAGC GAGGCCAACGACCTGGTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 558; Mature: 558
Protein sequence:
>558_residues MLENLYPALMLGAVVLLAILVIGIIIVRLYQRASKELSFVRTGLGGQKVVMDGGAIVLPGFHQIIPVNMNTLKLEVARSG KDSLFTKDRMRVDAVAAFFVRVRPMLEGIAQAAQTLGQRTMDPTALKELIEDKFVDSLRAAAVSMTMQELLDMRQDFIQA VQNTVQEDLMKNGLELESVSLTRIDQTAMQFFDPNNAFDAEGLTKLTEETQLRAKQRNDIEQDTAVQIAEKNFMTKQEQL RIAQQQTFAVLSQEQEVANRQAEQSAQVAGFEAAKKQESEQARITAERQIKEAEVERDRSVQQRQIEAERGLKVAAIEQQ RSIEIAEQERAIAIAQKSEQQSVAEAQANLARAESVKAAQSVVTAEEVARAEREKQVAMVKADEDAQRRAIELTVAAEAE RQAAEDRAQAIRTLAEANATNYEVEAEGKRKLNDAVNVLSPEQIAMNVKLELIRALPEIIAASVKPIERIDGIKIIQVDG LNRGSAAGAASAGLGASATGNLAEQAVSAALAYRAQQPLIDSLLSEVGLKEGVSARLDASLFTPNASVKTERVPELEE
Sequences:
>Translated_558_residues MLENLYPALMLGAVVLLAILVIGIIIVRLYQRASKELSFVRTGLGGQKVVMDGGAIVLPGFHQIIPVNMNTLKLEVARSG KDSLFTKDRMRVDAVAAFFVRVRPMLEGIAQAAQTLGQRTMDPTALKELIEDKFVDSLRAAAVSMTMQELLDMRQDFIQA VQNTVQEDLMKNGLELESVSLTRIDQTAMQFFDPNNAFDAEGLTKLTEETQLRAKQRNDIEQDTAVQIAEKNFMTKQEQL RIAQQQTFAVLSQEQEVANRQAEQSAQVAGFEAAKKQESEQARITAERQIKEAEVERDRSVQQRQIEAERGLKVAAIEQQ RSIEIAEQERAIAIAQKSEQQSVAEAQANLARAESVKAAQSVVTAEEVARAEREKQVAMVKADEDAQRRAIELTVAAEAE RQAAEDRAQAIRTLAEANATNYEVEAEGKRKLNDAVNVLSPEQIAMNVKLELIRALPEIIAASVKPIERIDGIKIIQVDG LNRGSAAGAASAGLGASATGNLAEQAVSAALAYRAQQPLIDSLLSEVGLKEGVSARLDASLFTPNASVKTERVPELEE >Mature_558_residues MLENLYPALMLGAVVLLAILVIGIIIVRLYQRASKELSFVRTGLGGQKVVMDGGAIVLPGFHQIIPVNMNTLKLEVARSG KDSLFTKDRMRVDAVAAFFVRVRPMLEGIAQAAQTLGQRTMDPTALKELIEDKFVDSLRAAAVSMTMQELLDMRQDFIQA VQNTVQEDLMKNGLELESVSLTRIDQTAMQFFDPNNAFDAEGLTKLTEETQLRAKQRNDIEQDTAVQIAEKNFMTKQEQL RIAQQQTFAVLSQEQEVANRQAEQSAQVAGFEAAKKQESEQARITAERQIKEAEVERDRSVQQRQIEAERGLKVAAIEQQ RSIEIAEQERAIAIAQKSEQQSVAEAQANLARAESVKAAQSVVTAEEVARAEREKQVAMVKADEDAQRRAIELTVAAEAE RQAAEDRAQAIRTLAEANATNYEVEAEGKRKLNDAVNVLSPEQIAMNVKLELIRALPEIIAASVKPIERIDGIKIIQVDG LNRGSAAGAASAGLGASATGNLAEQAVSAALAYRAQQPLIDSLLSEVGLKEGVSARLDASLFTPNASVKTERVPELEE
Specific function: Unknown
COG id: COG2268
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yuaG and Synechocystis PCC 6803 sll1021 [H]
Homologues:
Organism=Escherichia coli, GI1789430, Length=540, Percent_Identity=60.1851851851852, Blast_Score=602, Evalue=1e-173,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001107 [H]
Pfam domain/function: PF01145 Band_7 [H]
EC number: NA
Molecular weight: Translated: 61063; Mature: 61063
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLENLYPALMLGAVVLLAILVIGIIIVRLYQRASKELSFVRTGLGGQKVVMDGGAIVLPG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECC FHQIIPVNMNTLKLEVARSGKDSLFTKDRMRVDAVAAFFVRVRPMLEGIAQAAQTLGQRT CCEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC MDPTALKELIEDKFVDSLRAAAVSMTMQELLDMRQDFIQAVQNTVQEDLMKNGLELESVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH LTRIDQTAMQFFDPNNAFDAEGLTKLTEETQLRAKQRNDIEQDTAVQIAEKNFMTKQEQL HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH RIAQQQTFAVLSQEQEVANRQAEQSAQVAGFEAAKKQESEQARITAERQIKEAEVERDRS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQQRQIEAERGLKVAAIEQQRSIEIAEQERAIAIAQKSEQQSVAEAQANLARAESVKAAQ HHHHHHHHHCCCEEEEECHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVVTAEEVARAEREKQVAMVKADEDAQRRAIELTVAAEAERQAAEDRAQAIRTLAEANAT HHHHHHHHHHHHHHHHEEEEECCCHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCC NYEVEAEGKRKLNDAVNVLSPEQIAMNVKLELIRALPEIIAASVKPIERIDGIKIIQVDG CEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEEEECC LNRGSAAGAASAGLGASATGNLAEQAVSAALAYRAQQPLIDSLLSEVGLKEGVSARLDAS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHCCCCHHCCCC LFTPNASVKTERVPELEE EECCCCCCCCCCCCCCCC >Mature Secondary Structure MLENLYPALMLGAVVLLAILVIGIIIVRLYQRASKELSFVRTGLGGQKVVMDGGAIVLPG CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEECC FHQIIPVNMNTLKLEVARSGKDSLFTKDRMRVDAVAAFFVRVRPMLEGIAQAAQTLGQRT CCEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC MDPTALKELIEDKFVDSLRAAAVSMTMQELLDMRQDFIQAVQNTVQEDLMKNGLELESVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEH LTRIDQTAMQFFDPNNAFDAEGLTKLTEETQLRAKQRNDIEQDTAVQIAEKNFMTKQEQL HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH RIAQQQTFAVLSQEQEVANRQAEQSAQVAGFEAAKKQESEQARITAERQIKEAEVERDRS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQQRQIEAERGLKVAAIEQQRSIEIAEQERAIAIAQKSEQQSVAEAQANLARAESVKAAQ HHHHHHHHHCCCEEEEECHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVVTAEEVARAEREKQVAMVKADEDAQRRAIELTVAAEAERQAAEDRAQAIRTLAEANAT HHHHHHHHHHHHHHHHEEEEECCCHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCC NYEVEAEGKRKLNDAVNVLSPEQIAMNVKLELIRALPEIIAASVKPIERIDGIKIIQVDG CEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEEEECC LNRGSAAGAASAGLGASATGNLAEQAVSAALAYRAQQPLIDSLLSEVGLKEGVSARLDAS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHCCCCHHCCCC LFTPNASVKTERVPELEE EECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9205837; 9278503 [H]