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The map label for this gene is ygcF [C]

Identifier: 74318221

GI number: 74318221

Start: 2283769

End: 2284419

Strand: Reverse

Name: ygcF [C]

Synonym: Tbd_2203

Alternate gene names: 74318221

Gene position: 2284419-2283769 (Counterclockwise)

Preceding gene: 74318222

Following gene: 74318220

Centisome position: 78.51

GC content: 69.43

Gene sequence:

>651_bases
GTGCTCGCTCCGCCCACGCTTCGCATCACCGAGATCTTCCTTTCGCTCCAGGGCGAGACCAGCCGCACCGGTCTTGCGAC
CGTCTTCGTGCGCCTCGCCGGCTGCCCCTTGCGCTGTCGCTGGTGCGATACGACCTATAGTTTCCAGGGCGGCGAGACCG
TGTCACTCGACGAGGTCCTCGCGCGTGTCGCGGGGTTCGGCGTCTCCGTCGTCTGTGTGACCGGCGGCGAACCGCTCGCA
CAAAAGAATTGCCTGCCGCTGCTTGCGCGCCTGTGCGACGCTGGGTATTCGGTGTCCCTCGAGACGAGCGGCGCGCTCGA
CGTGAGCGCGGTCGACCCGCGCGTGTCGCGCATCGTCGACGTCAAGCCGCCCGAGTCGGGCGAGGTCGCCCGCAACCGCT
GGGAGAACCTCGCCCATCTCGGCGCGCACGACGAGATCAAATTCGTGCTCGCCGACCGCGCGGACTACGAGTGGGCGCGC
GAGGTGCTGCGCGAACGCGCGCTCGAGCGGGTATGCCCGGTCCTGTTTTCGCCGGTGCAGGGCGAACTCGCGCCGGCGCA
ACTCGCCGAGTGGATCCTCGCCGACCGCCTGCCGGTGCGGATGCAGGTGCAGCTGCACAAGCTGTTGTGGGGCAGCGCCC
CGGGCCGATGA

Upstream 100 bases:

>100_bases
TCCAGGCACGAATGCCGCGGCCCTCGCCGAACGCCGGCTGGCCGTCCTTAAATAGACTCCTCCGCAGCGTCTTCGCGGCG
CTGCGCCCGATACGCCCGCC

Downstream 100 bases:

>100_bases
AGCCGTGTGCGATCGTCCTCTTGTCGGGTGGCCTCGATTCCGCCACCGCGCTCGCGATGGCGCGCGAGGCGGGCTTTGCC
TGCCACGCCCTGAGCCTCGA

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MLAPPTLRITEIFLSLQGETSRTGLATVFVRLAGCPLRCRWCDTTYSFQGGETVSLDEVLARVAGFGVSVVCVTGGEPLA
QKNCLPLLARLCDAGYSVSLETSGALDVSAVDPRVSRIVDVKPPESGEVARNRWENLAHLGAHDEIKFVLADRADYEWAR
EVLRERALERVCPVLFSPVQGELAPAQLAEWILADRLPVRMQVQLHKLLWGSAPGR

Sequences:

>Translated_216_residues
MLAPPTLRITEIFLSLQGETSRTGLATVFVRLAGCPLRCRWCDTTYSFQGGETVSLDEVLARVAGFGVSVVCVTGGEPLA
QKNCLPLLARLCDAGYSVSLETSGALDVSAVDPRVSRIVDVKPPESGEVARNRWENLAHLGAHDEIKFVLADRADYEWAR
EVLRERALERVCPVLFSPVQGELAPAQLAEWILADRLPVRMQVQLHKLLWGSAPGR
>Mature_216_residues
MLAPPTLRITEIFLSLQGETSRTGLATVFVRLAGCPLRCRWCDTTYSFQGGETVSLDEVLARVAGFGVSVVCVTGGEPLA
QKNCLPLLARLCDAGYSVSLETSGALDVSAVDPRVSRIVDVKPPESGEVARNRWENLAHLGAHDEIKFVLADRADYEWAR
EVLRERALERVCPVLFSPVQGELAPAQLAEWILADRLPVRMQVQLHKLLWGSAPGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=225, Percent_Identity=30.2222222222222, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23664; Mature: 23664

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAPPTLRITEIFLSLQGETSRTGLATVFVRLAGCPLRCRWCDTTYSFQGGETVSLDEVL
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCEECHHHHH
ARVAGFGVSVVCVTGGEPLAQKNCLPLLARLCDAGYSVSLETSGALDVSAVDPRVSRIVD
HHHHCCCEEEEEEECCCCHHHCCHHHHHHHHHCCCCEEEEECCCCEEEECCCHHHHHEEE
VKPPESGEVARNRWENLAHLGAHDEIKFVLADRADYEWAREVLRERALERVCPVLFSPVQ
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
GELAPAQLAEWILADRLPVRMQVQLHKLLWGSAPGR
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLAPPTLRITEIFLSLQGETSRTGLATVFVRLAGCPLRCRWCDTTYSFQGGETVSLDEVL
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCEECHHHHH
ARVAGFGVSVVCVTGGEPLAQKNCLPLLARLCDAGYSVSLETSGALDVSAVDPRVSRIVD
HHHHCCCEEEEEEECCCCHHHCCHHHHHHHHHCCCCEEEEECCCCEEEECCCHHHHHEEE
VKPPESGEVARNRWENLAHLGAHDEIKFVLADRADYEWAREVLRERALERVCPVLFSPVQ
CCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCC
GELAPAQLAEWILADRLPVRMQVQLHKLLWGSAPGR
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]