| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is hemH
Identifier: 74318051
GI number: 74318051
Start: 2124162
End: 2125265
Strand: Direct
Name: hemH
Synonym: Tbd_2033
Alternate gene names: 74318051
Gene position: 2124162-2125265 (Clockwise)
Preceding gene: 74318050
Following gene: 74318052
Centisome position: 73.0
GC content: 68.21
Gene sequence:
>1104_bases ATGAAATACGCCGAAGAGCCCGAATACGCGCACGGAACGCCGCTGTGCGCAGGCGTCCTGCTGGTCAATCTGGGCACCCC CGAGGCGCCGACGGCCGCTGCCCTGCGGCCTTATCTCAAGGAATTCCTGTCCGACCCGCGCGTGGTCGAAATCCCGCGCG CGCTCTGGTGGCTCGTGCTGAACGGCATCATTCTCAACACCCGGCCGCGCAAGTCGGCCGAAAAATACGCCGCGATCTGG ACCAGCGAGGGGTCACCGCTGAAGGTCCACACCGAAAAGCAGGCGAAACTCCTCAAGGGCTGGCTCGGTGAGCACGCCGC CGCGCCGGTCGTCGTCGACTACGCGATGCGCTACGGCCGGCCGGGGATCCCGGAGGTTCTCGCACGAATGAAGGCCGCCG GCTGCGACCGTATCCTCGTACTGCCGGCCTATCCGCAATACGCCGCGTCGAGCACGGCGACCGCGTTCGACGCGGCGTTC GACTGGCTGCGCAGAACGCGCAATCAGCCGGCACTGCGCACGCTCAAGCACTACCACGACCACCCCGAGTACATCCGCGC ACTCGCCGCCAACCTGCGCGACTACTGGCAGATGCACGGCCGCCCCGACGTCCTCGTCATGAGCTTCCACGGCGTGCCGC GCTACACGCTCGACAAGGGCGACCCCTATCACTGCGAATGCCAGAAGACGGCGCGCCTGCTCGCCGCCGCACTCGGCCTC GAGCCGGGTCAGTTCCGCGTGACCTTCCAGTCGCGCTTCGGCCGGGCCGAATGGCTCAAACCCTATACCGACAAGACGCT CGAAGCGCTCGGCCGCGAGGGCGTCGGACGGGTCGACGTCGTTGCGCCGGGTTTCACGGCCGATTGCCTGGAGACGCTCG AGGAACTCGCGATGGAGGGACGCGCGAGCTTTCTCGCCGCCGGCGGCAAGGAATTCCACTACGTCCCCGCGCTCAACGAG CACCCGCAATGGATCGCCGCACTCGGCAGGATCGCGCTCGCCAACCTCGCGGGCTGGCTCGACGAGGGCTGGACACCCGA CGCCGACGAGGCGTCGCGTCAGCTCAGCAGAAGCCGCGCGCTCGCGCTGGGCGCGCAACGCTGA
Upstream 100 bases:
>100_bases CGCTCGGCGTCGTCGGCCCGACGCGCATGGCCTACGAGCGCGTCGTGCCGATCGTCGACGTCACCGCGAAAATCCTCTCC AGCGCCCTCTCCCAACACAA
Downstream 100 bases:
>100_bases GAAATACGCTATAAAAAAACCTGTCCGCGCCGCGGGCCCCTCGGAAGCCGAACCGACCAACCCAAATGACGCCGTCCTCC GCCGTCGCAAGCTGTCTGCT
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MKYAEEPEYAHGTPLCAGVLLVNLGTPEAPTAAALRPYLKEFLSDPRVVEIPRALWWLVLNGIILNTRPRKSAEKYAAIW TSEGSPLKVHTEKQAKLLKGWLGEHAAAPVVVDYAMRYGRPGIPEVLARMKAAGCDRILVLPAYPQYAASSTATAFDAAF DWLRRTRNQPALRTLKHYHDHPEYIRALAANLRDYWQMHGRPDVLVMSFHGVPRYTLDKGDPYHCECQKTARLLAAALGL EPGQFRVTFQSRFGRAEWLKPYTDKTLEALGREGVGRVDVVAPGFTADCLETLEELAMEGRASFLAAGGKEFHYVPALNE HPQWIAALGRIALANLAGWLDEGWTPDADEASRQLSRSRALALGAQR
Sequences:
>Translated_367_residues MKYAEEPEYAHGTPLCAGVLLVNLGTPEAPTAAALRPYLKEFLSDPRVVEIPRALWWLVLNGIILNTRPRKSAEKYAAIW TSEGSPLKVHTEKQAKLLKGWLGEHAAAPVVVDYAMRYGRPGIPEVLARMKAAGCDRILVLPAYPQYAASSTATAFDAAF DWLRRTRNQPALRTLKHYHDHPEYIRALAANLRDYWQMHGRPDVLVMSFHGVPRYTLDKGDPYHCECQKTARLLAAALGL EPGQFRVTFQSRFGRAEWLKPYTDKTLEALGREGVGRVDVVAPGFTADCLETLEELAMEGRASFLAAGGKEFHYVPALNE HPQWIAALGRIALANLAGWLDEGWTPDADEASRQLSRSRALALGAQR >Mature_367_residues MKYAEEPEYAHGTPLCAGVLLVNLGTPEAPTAAALRPYLKEFLSDPRVVEIPRALWWLVLNGIILNTRPRKSAEKYAAIW TSEGSPLKVHTEKQAKLLKGWLGEHAAAPVVVDYAMRYGRPGIPEVLARMKAAGCDRILVLPAYPQYAASSTATAFDAAF DWLRRTRNQPALRTLKHYHDHPEYIRALAANLRDYWQMHGRPDVLVMSFHGVPRYTLDKGDPYHCECQKTARLLAAALGL EPGQFRVTFQSRFGRAEWLKPYTDKTLEALGREGVGRVDVVAPGFTADCLETLEELAMEGRASFLAAGGKEFHYVPALNE HPQWIAALGRIALANLAGWLDEGWTPDADEASRQLSRSRALALGAQR
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family
Homologues:
Organism=Homo sapiens, GI60499025, Length=329, Percent_Identity=26.1398176291793, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI60499021, Length=329, Percent_Identity=26.1398176291793, Blast_Score=106, Evalue=3e-23, Organism=Escherichia coli, GI1786681, Length=318, Percent_Identity=45.2830188679245, Blast_Score=282, Evalue=2e-77, Organism=Saccharomyces cerevisiae, GI6324750, Length=330, Percent_Identity=22.7272727272727, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI17864156, Length=333, Percent_Identity=24.3243243243243, Blast_Score=98, Evalue=1e-20, Organism=Drosophila melanogaster, GI24651774, Length=262, Percent_Identity=23.6641221374046, Blast_Score=76, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HEMH_THIDA (Q3SHA3)
Other databases:
- EMBL: CP000116 - RefSeq: YP_315791.1 - ProteinModelPortal: Q3SHA3 - SMR: Q3SHA3 - STRING: Q3SHA3 - GeneID: 3672204 - GenomeReviews: CP000116_GR - KEGG: tbd:Tbd_2033 - NMPDR: fig|292415.3.peg.2173 - eggNOG: COG0276 - HOGENOM: HBG697135 - OMA: IRPAKSA - PhylomeDB: Q3SHA3 - ProtClustDB: PRK00035 - BioCyc: TDEN292415:TBD_2033-MONOMER - GO: GO:0005737 - HAMAP: MF_00323 - InterPro: IPR001015 - InterPro: IPR019772 - PANTHER: PTHR11108 - TIGRFAMs: TIGR00109
Pfam domain/function: PF00762 Ferrochelatase
EC number: =4.99.1.1
Molecular weight: Translated: 40793; Mature: 40793
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKYAEEPEYAHGTPLCAGVLLVNLGTPEAPTAAALRPYLKEFLSDPRVVEIPRALWWLVL CCCCCCCCCCCCCHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH NGIILNTRPRKSAEKYAAIWTSEGSPLKVHTEKQAKLLKGWLGEHAAAPVVVDYAMRYGR CCEEECCCCCHHHHHHEEEEECCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHCCC PGIPEVLARMKAAGCDRILVLPAYPQYAASSTATAFDAAFDWLRRTRNQPALRTLKHYHD CCHHHHHHHHHHCCCCEEEEEECCCCHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC HPEYIRALAANLRDYWQMHGRPDVLVMSFHGVPRYTLDKGDPYHCECQKTARLLAAALGL CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCCCEECHHHHHHHHHHHHCC EPGQFRVTFQSRFGRAEWLKPYTDKTLEALGREGVGRVDVVAPGFTADCLETLEELAMEG CCCCEEEEEHHHCCCHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC RASFLAAGGKEFHYVPALNEHPQWIAALGRIALANLAGWLDEGWTPDADEASRQLSRSRA CHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LALGAQR HHCCCCC >Mature Secondary Structure MKYAEEPEYAHGTPLCAGVLLVNLGTPEAPTAAALRPYLKEFLSDPRVVEIPRALWWLVL CCCCCCCCCCCCCHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHH NGIILNTRPRKSAEKYAAIWTSEGSPLKVHTEKQAKLLKGWLGEHAAAPVVVDYAMRYGR CCEEECCCCCHHHHHHEEEEECCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHCCC PGIPEVLARMKAAGCDRILVLPAYPQYAASSTATAFDAAFDWLRRTRNQPALRTLKHYHD CCHHHHHHHHHHCCCCEEEEEECCCCHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC HPEYIRALAANLRDYWQMHGRPDVLVMSFHGVPRYTLDKGDPYHCECQKTARLLAAALGL CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCCCEECHHHHHHHHHHHHCC EPGQFRVTFQSRFGRAEWLKPYTDKTLEALGREGVGRVDVVAPGFTADCLETLEELAMEG CCCCEEEEEHHHCCCHHHCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC RASFLAAGGKEFHYVPALNEHPQWIAALGRIALANLAGWLDEGWTPDADEASRQLSRSRA CHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LALGAQR HHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA