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The map label for this gene is rnfB

Identifier: 74318034

GI number: 74318034

Start: 2105678

End: 2106244

Strand: Direct

Name: rnfB

Synonym: Tbd_2016

Alternate gene names: 74318034

Gene position: 2105678-2106244 (Clockwise)

Preceding gene: 74318033

Following gene: 74318035

Centisome position: 72.36

GC content: 64.37

Gene sequence:

>567_bases
ATGTTCACCGCAATCTGGGTCATGGTCGGCCTGGCCATCGCGATCGGGCTGATACTCGGCTGGTCGGCGATCCGCTTCAA
GGTCGAGGGCAATCCGCTCGCCGAGAAGATCGACGCGATTCTGCCGCAGACGCAGTGCGGGCAGTGCGGCTTTCCCGGCT
GCCGGCCCTACGCCGAGGCGATCGCGAAAGGCGAGGCGGACATCAACCAGTGTCCGCCCGGCGGCGAGGAAGGGGTCAAA
AAACTTGCCGAACTGCTCGGCGTCGAGCCCAAGCCGCTCGACGAGGCCCACGGCACACCGAAGCCGAAATCGGTCGCCTT
CATCGACGAACAGACCTGCATCGGCTGCACGCTGTGCATCCAGGCCTGCCCGGTCGATGCGATCTCCGGCGCAGCCAAGC
AGATGCATACCATCATCGCGGACGAATGCACGGGCTGCGAACTGTGTCTCGCCCCCTGTCCCGTCGACTGCATCTCGATG
GTGCCGATCGCCGAGGACCTGCCGCACTGGAAATGGAAGCACCCCGTGGTGATGATGAAACAGGTCGGCGAGAGCACACG
CGTATGA

Upstream 100 bases:

>100_bases
CCTGTGACGTGCCTGCCCCGTTCAAGGGCACGAGCATCGCGATGGTCACCGCGGGACTGATGTCGCTCGCCTTCATGGGC
TTCTCGGGCCTGGTCAAGTA

Downstream 100 bases:

>100_bases
GCCGTCCGCTGTTCCAGTTCAAGGGCGGCGTGCACCCGCCGGGGCACAAGGCCGAGTCGAACACGCGGCCGATCCACGCG
GCGCCGCTGCCGAAAAAGCT

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MFTAIWVMVGLAIAIGLILGWSAIRFKVEGNPLAEKIDAILPQTQCGQCGFPGCRPYAEAIAKGEADINQCPPGGEEGVK
KLAELLGVEPKPLDEAHGTPKPKSVAFIDEQTCIGCTLCIQACPVDAISGAAKQMHTIIADECTGCELCLAPCPVDCISM
VPIAEDLPHWKWKHPVVMMKQVGESTRV

Sequences:

>Translated_188_residues
MFTAIWVMVGLAIAIGLILGWSAIRFKVEGNPLAEKIDAILPQTQCGQCGFPGCRPYAEAIAKGEADINQCPPGGEEGVK
KLAELLGVEPKPLDEAHGTPKPKSVAFIDEQTCIGCTLCIQACPVDAISGAAKQMHTIIADECTGCELCLAPCPVDCISM
VPIAEDLPHWKWKHPVVMMKQVGESTRV
>Mature_188_residues
MFTAIWVMVGLAIAIGLILGWSAIRFKVEGNPLAEKIDAILPQTQCGQCGFPGCRPYAEAIAKGEADINQCPPGGEEGVK
KLAELLGVEPKPLDEAHGTPKPKSVAFIDEQTCIGCTLCIQACPVDAISGAAKQMHTIIADECTGCELCLAPCPVDCISM
VPIAEDLPHWKWKHPVVMMKQVGESTRV

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=177, Percent_Identity=58.1920903954802, Blast_Score=208, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_THIDA (Q3SHB7)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_315774.1
- HSSP:   Q9I6D2
- ProteinModelPortal:   Q3SHB7
- SMR:   Q3SHB7
- STRING:   Q3SHB7
- GeneID:   3672187
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_2016
- NMPDR:   fig|292415.3.peg.2132
- eggNOG:   COG2878
- HOGENOM:   HBG549899
- OMA:   KFKVEGD
- PhylomeDB:   Q3SHB7
- ProtClustDB:   PRK05113
- BioCyc:   TDEN292415:TBD_2016-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 20053; Mature: 20053

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
6.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTAIWVMVGLAIAIGLILGWSAIRFKVEGNPLAEKIDAILPQTQCGQCGFPGCRPYAEA
CHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
IAKGEADINQCPPGGEEGVKKLAELLGVEPKPLDEAHGTPKPKSVAFIDEQTCIGCTLCI
HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH
QACPVDAISGAAKQMHTIIADECTGCELCLAPCPVDCISMVPIAEDLPHWKWKHPVVMMK
HHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCHHHCCCCCCCCHHHHHH
QVGESTRV
HHCCCCCC
>Mature Secondary Structure
MFTAIWVMVGLAIAIGLILGWSAIRFKVEGNPLAEKIDAILPQTQCGQCGFPGCRPYAEA
CHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
IAKGEADINQCPPGGEEGVKKLAELLGVEPKPLDEAHGTPKPKSVAFIDEQTCIGCTLCI
HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHH
QACPVDAISGAAKQMHTIIADECTGCELCLAPCPVDCISMVPIAEDLPHWKWKHPVVMMK
HHCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCHHHCCCCCCCCHHHHHH
QVGESTRV
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA