Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is yfjF [C]

Identifier: 74317772

GI number: 74317772

Start: 1846233

End: 1846571

Strand: Reverse

Name: yfjF [C]

Synonym: Tbd_1754

Alternate gene names: 74317772

Gene position: 1846571-1846233 (Counterclockwise)

Preceding gene: 74317773

Following gene: 74317770

Centisome position: 63.46

GC content: 66.37

Gene sequence:

>339_bases
ATGAGCCTGAACGTCGAAGTCGTCTACGCGCTGCCGTCCGAGCAGCCCTTGCTCAACGTCCAGCTGGCCGAGGGCGCGAC
CGTCGAAGACGCGATCCGCGCGTCGGGCGTGCTCGAGGCTTTTCCGGAAATCGATCTCGCGCGCAACAAGGTCGGAATCT
TCAGCAAGCTCGTCAAGCTCAATGAACCCGTGCGCGACCGCGATCGGGTCGAGATCTACCGGCCGTTGATCGCCGATCCC
AAGGAGGTGCGGCGCAAGCGCGCGGAAGAAGGCAAGGTCACGCGCAAGGGCGGTGGCGACGCGGCTACGCCAGAGGCGGG
CGGACCCGAGCCGACCTGA

Upstream 100 bases:

>100_bases
CCAGCCGCGTGCTCGAAGCGTTGCTGACGCCGGTCTTCGGCCACATCACCAATACCTTCGTCGATGCCTTCGTGCACCGC
GCAGACGAGATATACGCCGC

Downstream 100 bases:

>100_bases
AACGGCTCTGTCGCCGCGCGTCGTCTGCTGGCCAACACCCATGCCGATATGAAAAGCTTGCAGCCGCGGGCAGGGCCCGA
CTCAGCACTCGCAGAAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MSLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKLNEPVRDRDRVEIYRPLIADP
KEVRRKRAEEGKVTRKGGGDAATPEAGGPEPT

Sequences:

>Translated_112_residues
MSLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKLNEPVRDRDRVEIYRPLIADP
KEVRRKRAEEGKVTRKGGGDAATPEAGGPEPT
>Mature_111_residues
SLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKLNEPVRDRDRVEIYRPLIADPK
EVRRKRAEEGKVTRKGGGDAATPEAGGPEPT

Specific function: Unknown

COG id: COG2914

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0125 (rnfH) family [H]

Homologues:

Organism=Escherichia coli, GI87082139, Length=89, Percent_Identity=65.1685393258427, Blast_Score=113, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005346 [H]

Pfam domain/function: PF03658 UPF0125 [H]

EC number: NA

Molecular weight: Translated: 12191; Mature: 12060

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKL
CCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH
NEPVRDRDRVEIYRPLIADPKEVRRKRAEEGKVTRKGGGDAATPEAGGPEPT
CCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SLNVEVVYALPSEQPLLNVQLAEGATVEDAIRASGVLEAFPEIDLARNKVGIFSKLVKL
CCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH
NEPVRDRDRVEIYRPLIADPKEVRRKRAEEGKVTRKGGGDAATPEAGGPEPT
CCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA