| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yceF [C]
Identifier: 74317575
GI number: 74317575
Start: 1641233
End: 1641838
Strand: Direct
Name: yceF [C]
Synonym: Tbd_1557
Alternate gene names: 74317575
Gene position: 1641233-1641838 (Clockwise)
Preceding gene: 74317574
Following gene: 74317576
Centisome position: 56.4
GC content: 68.48
Gene sequence:
>606_bases ATGACGCGCACGAGCCCCACGCTCGTCCTCGCCTCGACCTCGCGCTACCGGCGCGAACTGTTGGCGCGGCTCCGCCTGCC CTTCGAGGTGCTCGCGCCGAACGTCGACGAGACGCCGCTACCCGGCGAAACGCGCTCGGCGACCGCACTGCGGCTGTCGG TGCTCAAGGCGCAGGCCGCCGCAATGACCCATCGCGATGCGCTGGTCATCGGCTCCGACCAGGTCCTGATGCTCGGCACC GAACAGCTCGGCAAGCCGGGCGACCATGAGCGCGCCTTCGCCCAGCTCAAGAAGATGCAGGGTCGCGCAATGGTCTTCCA CACCGCGCTCACGCTGCTCAACAGTCGCACGGGCTCGGTGCAGACGCGCGACGTGCCGACGGTCGTGCACATTCGCCCGC TCACCGACGCCCAGATCGAGGCCTACCTAAAAAAGGAGCAGCCCTACGATTGCGCGGGCTCGGCGAAGAGCGAGGCGCTC GGGATCGCGCTCATGGAGCGCATGGAGAGTCCCGACCCCACGGCATTGATCGGCCTGCCGCTGATGGCGCTGACCGAGAT GCTCGCCCAGGAAGGCGTCGACGTTCTCACCTGGCCGGCGACGTAG
Upstream 100 bases:
>100_bases GCGAAGTCCAGGCGCCGATCGCCGGTGTCGTCATCAACCTGTTCGCCAAGAAAGGCGACGCGGTGACGCCCGACATGGCG CTCGTCGAGATCCAGCCCGC
Downstream 100 bases:
>100_bases TCCGCGTGGCCACGCTGTACCTGATCCCAGTGCCGCTCGGGCCGGTCAGCCCCGAGTCCTGTCTTCCCGCCGACACGCTC GCGGTCGCCCGCCGCCTCGA
Product: Maf-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MTRTSPTLVLASTSRYRRELLARLRLPFEVLAPNVDETPLPGETRSATALRLSVLKAQAAAMTHRDALVIGSDQVLMLGT EQLGKPGDHERAFAQLKKMQGRAMVFHTALTLLNSRTGSVQTRDVPTVVHIRPLTDAQIEAYLKKEQPYDCAGSAKSEAL GIALMERMESPDPTALIGLPLMALTEMLAQEGVDVLTWPAT
Sequences:
>Translated_201_residues MTRTSPTLVLASTSRYRRELLARLRLPFEVLAPNVDETPLPGETRSATALRLSVLKAQAAAMTHRDALVIGSDQVLMLGT EQLGKPGDHERAFAQLKKMQGRAMVFHTALTLLNSRTGSVQTRDVPTVVHIRPLTDAQIEAYLKKEQPYDCAGSAKSEAL GIALMERMESPDPTALIGLPLMALTEMLAQEGVDVLTWPAT >Mature_200_residues TRTSPTLVLASTSRYRRELLARLRLPFEVLAPNVDETPLPGETRSATALRLSVLKAQAAAMTHRDALVIGSDQVLMLGTE QLGKPGDHERAFAQLKKMQGRAMVFHTALTLLNSRTGSVQTRDVPTVVHIRPLTDAQIEAYLKKEQPYDCAGSAKSEALG IALMERMESPDPTALIGLPLMALTEMLAQEGVDVLTWPAT
Specific function: Unknown
COG id: COG0424
COG function: function code D; Nucleotide-binding protein implicated in inhibition of septum formation
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the maf family
Homologues:
Organism=Escherichia coli, GI87081830, Length=191, Percent_Identity=49.738219895288, Blast_Score=180, Evalue=5e-47, Organism=Escherichia coli, GI1789646, Length=185, Percent_Identity=34.5945945945946, Blast_Score=90, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1557_THIDA (Q3SIL8)
Other databases:
- EMBL: CP000116 - RefSeq: YP_315315.1 - ProteinModelPortal: Q3SIL8 - STRING: Q3SIL8 - GeneID: 3672037 - GenomeReviews: CP000116_GR - KEGG: tbd:Tbd_1557 - NMPDR: fig|292415.3.peg.1556 - eggNOG: COG0424 - HOGENOM: HBG414045 - OMA: EFHSALA - PhylomeDB: Q3SIL8 - BioCyc: TDEN292415:TBD_1557-MONOMER - GO: GO:0005737 - HAMAP: MF_00528 - InterPro: IPR003697 - PIRSF: PIRSF006305 - TIGRFAMs: TIGR00172
Pfam domain/function: PF02545 Maf
EC number: NA
Molecular weight: Translated: 21915; Mature: 21784
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: ACT_SITE 37-37
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTSPTLVLASTSRYRRELLARLRLPFEVLAPNVDETPLPGETRSATALRLSVLKAQAA CCCCCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AMTHRDALVIGSDQVLMLGTEQLGKPGDHERAFAQLKKMQGRAMVFHTALTLLNSRTGSV HHHCCCEEEECCCCEEEEEHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCE QTRDVPTVVHIRPLTDAQIEAYLKKEQPYDCAGSAKSEALGIALMERMESPDPTALIGLP EECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHH LMALTEMLAQEGVDVLTWPAT HHHHHHHHHHCCCCEEECCCC >Mature Secondary Structure TRTSPTLVLASTSRYRRELLARLRLPFEVLAPNVDETPLPGETRSATALRLSVLKAQAA CCCCCEEEEECCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AMTHRDALVIGSDQVLMLGTEQLGKPGDHERAFAQLKKMQGRAMVFHTALTLLNSRTGSV HHHCCCEEEECCCCEEEEEHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCE QTRDVPTVVHIRPLTDAQIEAYLKKEQPYDCAGSAKSEALGIALMERMESPDPTALIGLP EECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEHHHH LMALTEMLAQEGVDVLTWPAT HHHHHHHHHHCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA