| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317539
Identifier: 74317539
GI number: 74317539
Start: 1609333
End: 1609947
Strand: Reverse
Name: 74317539
Synonym: Tbd_1521
Alternate gene names: NA
Gene position: 1609947-1609333 (Counterclockwise)
Preceding gene: 74317542
Following gene: 74317537
Centisome position: 55.33
GC content: 71.22
Gene sequence:
>615_bases ATGAGCGGGTGCGGCTGCGATTCGGTGTGCGAGGCGCCCGCGCCCGATCCGGGTTACCGGCGGGCGTTGTGGCTTGCGCT CGTGCTGAACGTCCTGATGTTCGTGGTCGAGCTGGGCGCGAGCTTCTCTGCGCAGTCGGTCTCGCTGCTAGCCGACGCGG TCGATTTCCTCGGCGACGCCGGTAACTACGGCGTCGCGCTCTTCGTGCTCGGACTCGCACCCGTCTGGCGCTCGCGCACC GCGCTATGGAAGGGTTGGCTGATGATCGGCTACGGCGTCTTCGTGCTCGGCAAGTCGGCCTGGCAGTGGTCAGCGGGCGT CGTGCCCGAGCCGGTCATCATGGGCTGGGTGAGCCTGTTGGCGCTGGCCGTGAACGTCGGCGTCGCCGCGCTGCTGTACG CGCACCGCCGCGGCGACGCGCAGGCCCGCTCGGTGTGGCTGTGCTCACGCAACGACGCGCTCGGCAATCTCGCGGTCATC GGCGCGGCCGGCGGCGTATGGGTGACGGCCCACGGCTGGCCCGACATCGGGGTTGCCGTGGTGCTGGCCGGGCTGGCCCT GAGCTCAGGCGCCTCGGTGGTGCGACACGCCCGCGCCGAATTGCGCGGCGCCTAG
Upstream 100 bases:
>100_bases GGGGAGTGTGCATTCGTGGACATGAGTGGCAGGATGGCGCGATGAGAAAGACGGCATTCTACTCGCCGCGGCCTGCCCGG CGGCGCGGGGTACGGCGCAC
Downstream 100 bases:
>100_bases CGTTCCTGCTGGCGCGCGAGGGCCCAGGCGACATGCTCGCGTACCATCGCCGACGGGTGATCGAGGCGTGTGCCGAGCGC GGCTTCGATTGCGGGGGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Cation Efflux Permease; Cation Diffusion Facilitator Family Transporter; Heavy Metal Detoxification Protein; Cation Diffusion Facilitator; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; Cation Efflux System Permease; CDF Family Cobalt/Cadmium/Zinc Transporter
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MSGCGCDSVCEAPAPDPGYRRALWLALVLNVLMFVVELGASFSAQSVSLLADAVDFLGDAGNYGVALFVLGLAPVWRSRT ALWKGWLMIGYGVFVLGKSAWQWSAGVVPEPVIMGWVSLLALAVNVGVAALLYAHRRGDAQARSVWLCSRNDALGNLAVI GAAGGVWVTAHGWPDIGVAVVLAGLALSSGASVVRHARAELRGA
Sequences:
>Translated_204_residues MSGCGCDSVCEAPAPDPGYRRALWLALVLNVLMFVVELGASFSAQSVSLLADAVDFLGDAGNYGVALFVLGLAPVWRSRT ALWKGWLMIGYGVFVLGKSAWQWSAGVVPEPVIMGWVSLLALAVNVGVAALLYAHRRGDAQARSVWLCSRNDALGNLAVI GAAGGVWVTAHGWPDIGVAVVLAGLALSSGASVVRHARAELRGA >Mature_203_residues SGCGCDSVCEAPAPDPGYRRALWLALVLNVLMFVVELGASFSAQSVSLLADAVDFLGDAGNYGVALFVLGLAPVWRSRTA LWKGWLMIGYGVFVLGKSAWQWSAGVVPEPVIMGWVSLLALAVNVGVAALLYAHRRGDAQARSVWLCSRNDALGNLAVIG AAGGVWVTAHGWPDIGVAVVLAGLALSSGASVVRHARAELRGA
Specific function: Unknown
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21228; Mature: 21097
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGCGCDSVCEAPAPDPGYRRALWLALVLNVLMFVVELGASFSAQSVSLLADAVDFLGDA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC GNYGVALFVLGLAPVWRSRTALWKGWLMIGYGVFVLGKSAWQWSAGVVPEPVIMGWVSLL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH ALAVNVGVAALLYAHRRGDAQARSVWLCSRNDALGNLAVIGAAGGVWVTAHGWPDIGVAV HHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCEEEEECCCCEEEEECCCCCHHHHH VLAGLALSSGASVVRHARAELRGA HHHHHHHCCCHHHHHHHHHHHCCC >Mature Secondary Structure SGCGCDSVCEAPAPDPGYRRALWLALVLNVLMFVVELGASFSAQSVSLLADAVDFLGDA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC GNYGVALFVLGLAPVWRSRTALWKGWLMIGYGVFVLGKSAWQWSAGVVPEPVIMGWVSLL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH ALAVNVGVAALLYAHRRGDAQARSVWLCSRNDALGNLAVIGAAGGVWVTAHGWPDIGVAV HHHHHHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCEEEEECCCCEEEEECCCCCHHHHH VLAGLALSSGASVVRHARAELRGA HHHHHHHCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA