Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is 74317309

Identifier: 74317309

GI number: 74317309

Start: 1361799

End: 1363331

Strand: Direct

Name: 74317309

Synonym: Tbd_1291

Alternate gene names: NA

Gene position: 1361799-1363331 (Clockwise)

Preceding gene: 74317308

Following gene: 74317310

Centisome position: 46.8

GC content: 64.91

Gene sequence:

>1533_bases
ATGAGTGACAACACGAATACTCCGCACGACAGCGACGCGGAGCGGGGAGAGGCCAGCACGCTGAGCCGCCGCGAAATGCT
GAAGAGCCTGGGAATGGCTGGCGCCGTGTGCGCCGTCGGCCTGACCGCCGTCAAGGGGGCACAAGCGGCGCTGCCGACCT
TGTCCACGCCGTTCTCGGTGGCGACGAACGAAGGCTTCCCGCTGCCGAAAAGCCCGGAAGAGATCTGGTCGCTCGACTAC
GCCGGCAACCTGTTTCCCGGCATGCGCAACGGCCCCGCGCTGTCCGCGTTTTTCTACCCCGCGACCGGCATGTACATCGA
GGACAACGGCTCGATCAAGGTCGCCGACGCGCGCAATTCGCTGATCCGCAACATCTCCAACCTCGGCGACGTGACGATCT
TCAGCGGCAGCATGCAGCAGTATCCGTTCAAGGACGGCAGCGCCGTCGACACGAACTTCAACAGCCCGAACGACATCGAC
AAGCTCAGCGACGGCACCTACGTCGTGGGTGATCGCGAGAACAACGCGATCCGCCGCGTGTTCGCCGACGGCTCGGTCAA
GACGATCGCCGGCCAGGGCAACTGCAAGAACAAGTACAACGGCGACCAGAGCATCGGCACCCAGGCGCTGCTCAACCGCC
CGTTGACGCTGACCGTCGCCCGCGAGAACACCGCGTGGCACACCGTCGACACGGTCTACTTCTGCGACCGCGACAACCAG
CTGATCCGCAAGCTCGTCCCCAACGGCGACGGCACCTTCGCCGTCGTCACCGTCGCCGGCACGCCGCCGACGCCCGGTGC
CGACCCCTGCGGCGCCTTGACGTATTACCCCGGCCGCGTCGACGGCCCGACCGCCACGGCGAAATTCCGCGGCGCCTGCG
GCATCGTGCTGAGCCCCGATCAGCGTTACCTCTACATCGCCGAACGCGACAACAACATCGTTCGCTGCATCGACCTGATG
AACAACGTCGTCAGCACCTATGCCGGCGTGCTGATGGTCGGCCAGAAGCAGGGCGCTTTCGTCGACGGCCCAGCCAACGA
GGCGCGCTTCAACGGCTGCTCGCAGATCGACTACGACAACGCGGGCAACCTCTACGTCGCCGACCGCTTCAACCACGTGA
TCCGCAAGATCACGCCGAGCGCCGATCCGATGGTCGGCAAGATGGTGTCGACCTACGCCGGCGTGCCGATGCAGAGCGGC
CGCATCAGCGGGCCCGCGAGCAAAGCCAAGTTCTACGAGCCCTGGGGCCTTTCGGTCGACCGCAAGAACAACCTGATCTT
CATCGGCGATACGGCGAACAGCCGCGTAGCCGTGATCGGGCCGTACAAGGCGATCTGGGCCGCATTCGTCGAGCGGGTCA
ACAAGTCCCGTCTGTTCGAATACCAGCAACTCATGGCGCTGTACCAGAACTACTACCGCGGCGAGCAGATGCGCGATCCG
CAGATGCCGAAGTCCTACGCCAGCGAAAGCACGGGCGAATTCAGCGCGCCGGACGGCACGCTGTTCAGCGACGCACCGCG
TTCGACCTACTAA

Upstream 100 bases:

>100_bases
GATTTTTTCCAAGCGCGTCCCCACGCACCATAGCGCCTCCGAACAACGGGCTCGCCCGATCGGTTTTTGTCAGCCAAGAC
CAACTGTTAGAGGAAGCGCA

Downstream 100 bases:

>100_bases
AGCCAACCCGAGGGGGCTCGCCCCCCTCGTATTCAACCTCAAGTGGAGCAACGAAAAATGCAAAAAGGGATTCTTTCCCG
GGCCGTACTGGCCACCTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NHL Repeat Containing Protein; Serine/Threonine Protein Kinase; YD Repeat Protein; Serine/Threonine-Protein Kinase; SMP-30/Gluconolaconase/LRE Domain-Containing Protein; Fibronectin Type III Domain Protein; Ascorbate-Dependent Monooxygenase; Leucine-Rich Repeat-Containing Protein; YD Repeat-Containing Protein; NHL Repeat Protein; Redoxin Family; Copper Amine Oxidase Domain Protein; Immunoglobulin I-Set Domain-Containing Protein; Ig Domain-Containing Protein; Lipoprotein

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MSDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSVATNEGFPLPKSPEEIWSLDY
AGNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNSLIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDID
KLSDGTYVVGDRENNAIRRVFADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQ
LIRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPDQRYLYIAERDNNIVRCIDLM
NNVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDNAGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSG
RISGPASKAKFYEPWGLSVDRKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDP
QMPKSYASESTGEFSAPDGTLFSDAPRSTY

Sequences:

>Translated_510_residues
MSDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSVATNEGFPLPKSPEEIWSLDY
AGNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNSLIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDID
KLSDGTYVVGDRENNAIRRVFADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQ
LIRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPDQRYLYIAERDNNIVRCIDLM
NNVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDNAGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSG
RISGPASKAKFYEPWGLSVDRKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDP
QMPKSYASESTGEFSAPDGTLFSDAPRSTY
>Mature_509_residues
SDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSVATNEGFPLPKSPEEIWSLDYA
GNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNSLIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDIDK
LSDGTYVVGDRENNAIRRVFADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQL
IRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPDQRYLYIAERDNNIVRCIDLMN
NVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDNAGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSGR
ISGPASKAKFYEPWGLSVDRKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDPQ
MPKSYASESTGEFSAPDGTLFSDAPRSTY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55276; Mature: 55144

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCCCEE
ATNEGFPLPKSPEEIWSLDYAGNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNS
ECCCCCCCCCCHHHHEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEEHHHHH
LIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDIDKLSDGTYVVGDRENNAIRRV
HHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCCCCCCHHHCCCCCEEEECCCCCCEEEE
FADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQ
ECCCCEEEEECCCCCCCCCCCCHHHCHHHHHCCCEEEEEEECCCCEEEEEEEEEECCCHH
LIRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPD
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCEEEEECCC
QRYLYIAERDNNIVRCIDLMNNVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDN
CCEEEEEECCCCEEHHHHHHHHHHHHHHCEEEEECCCCCEECCCCCHHHCCCCCCCCCCC
AGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSGRISGPASKAKFYEPWGLSVD
CCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCEEE
RKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDP
CCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QMPKSYASESTGEFSAPDGTLFSDAPRSTY
CCCHHHHCCCCCCCCCCCCCEECCCCCCCC
>Mature Secondary Structure 
SDNTNTPHDSDAERGEASTLSRREMLKSLGMAGAVCAVGLTAVKGAQAALPTLSTPFSV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCCCCCCEE
ATNEGFPLPKSPEEIWSLDYAGNLFPGMRNGPALSAFFYPATGMYIEDNGSIKVADARNS
ECCCCCCCCCCHHHHEEECCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEEEHHHHH
LIRNISNLGDVTIFSGSMQQYPFKDGSAVDTNFNSPNDIDKLSDGTYVVGDRENNAIRRV
HHHHHHHCCCEEEEECCCCCCCCCCCCEEECCCCCCCCHHHCCCCCEEEECCCCCCEEEE
FADGSVKTIAGQGNCKNKYNGDQSIGTQALLNRPLTLTVARENTAWHTVDTVYFCDRDNQ
ECCCCEEEEECCCCCCCCCCCCHHHCHHHHHCCCEEEEEEECCCCEEEEEEEEEECCCHH
LIRKLVPNGDGTFAVVTVAGTPPTPGADPCGALTYYPGRVDGPTATAKFRGACGIVLSPD
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCEEEEECCC
QRYLYIAERDNNIVRCIDLMNNVVSTYAGVLMVGQKQGAFVDGPANEARFNGCSQIDYDN
CCEEEEEECCCCEEHHHHHHHHHHHHHHCEEEEECCCCCEECCCCCHHHCCCCCCCCCCC
AGNLYVADRFNHVIRKITPSADPMVGKMVSTYAGVPMQSGRISGPASKAKFYEPWGLSVD
CCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCEEE
RKNNLIFIGDTANSRVAVIGPYKAIWAAFVERVNKSRLFEYQQLMALYQNYYRGEQMRDP
CCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
QMPKSYASESTGEFSAPDGTLFSDAPRSTY
CCCHHHHCCCCCCCCCCCCCEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA