| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317229
Identifier: 74317229
GI number: 74317229
Start: 1267169
End: 1267675
Strand: Reverse
Name: 74317229
Synonym: Tbd_1211
Alternate gene names: NA
Gene position: 1267675-1267169 (Counterclockwise)
Preceding gene: 74317230
Following gene: 74317228
Centisome position: 43.57
GC content: 52.66
Gene sequence:
>507_bases ATGCCCACCAAACCACTAGACCGTCTGATGTTTGTCCAAGGAGGCGTATGCTTTTTTTGCAAACAACCTTTGCCCAAGGC AGAGGCAAGTGTTGAGCATTTACTTGCCAGCGCCAATGGCGGAGGCAACAGCGATGAAAACTGCGTCGCTTGCTGCAAGG CGGTTAATGCGCTGCTCGGCAGTATGTCGCTCAAAGAAAAATTTCAGGTCGTGCTAAATCAGAAAGGGCAGTTCAAATGC CCCAACGGAGCTGGCTCTGCCAAAGCAGCCGCAAAGCCAAAAGCACCAGCCATCGCAAAGCCAAAGGATGACAAGCTCGC GCTGGTTATTGCCAATCTGAAGCAGCGCGGCAACTCCAAACCCCGCACACTCAAAACCCTCACGAGTTCTGTCTCATCCC TCTTTCCAAAGGGCATTTCTGAGGCTGATCTCGCCGCATTGGTTCAGCAGTTGCAATCAACGGGCAAGGTCACCGTGGAA GGGAGCAAGGTTACTTATGCGCTCTGA
Upstream 100 bases:
>100_bases TTGTTCGTTCCCATTTCTCACCTTTCCGCCGTGCCTAACACGGCGTTCTAGCGGGACTGTCCGCAAGCGGCCAGCCCCTA AACTTTGTCGTTAGAAGCCT
Downstream 100 bases:
>100_bases ATTAACGGCTTCTAACCCTACATTCGAGCGGGACTGCGCAAAAGCGCGCAGCCCCTCAATTCCACGTTAGCCCTCTCAAA GGAGAAGCCTCATGAGCAAG
Product: HNH nuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MPTKPLDRLMFVQGGVCFFCKQPLPKAEASVEHLLASANGGGNSDENCVACCKAVNALLGSMSLKEKFQVVLNQKGQFKC PNGAGSAKAAAKPKAPAIAKPKDDKLALVIANLKQRGNSKPRTLKTLTSSVSSLFPKGISEADLAALVQQLQSTGKVTVE GSKVTYAL
Sequences:
>Translated_168_residues MPTKPLDRLMFVQGGVCFFCKQPLPKAEASVEHLLASANGGGNSDENCVACCKAVNALLGSMSLKEKFQVVLNQKGQFKC PNGAGSAKAAAKPKAPAIAKPKDDKLALVIANLKQRGNSKPRTLKTLTSSVSSLFPKGISEADLAALVQQLQSTGKVTVE GSKVTYAL >Mature_167_residues PTKPLDRLMFVQGGVCFFCKQPLPKAEASVEHLLASANGGGNSDENCVACCKAVNALLGSMSLKEKFQVVLNQKGQFKCP NGAGSAKAAAKPKAPAIAKPKDDKLALVIANLKQRGNSKPRTLKTLTSSVSSLFPKGISEADLAALVQQLQSTGKVTVEG SKVTYAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17573; Mature: 17441
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTKPLDRLMFVQGGVCFFCKQPLPKAEASVEHLLASANGGGNSDENCVACCKAVNALLG CCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH SMSLKEKFQVVLNQKGQFKCPNGAGSAKAAAKPKAPAIAKPKDDKLALVIANLKQRGNSK CHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHEEHHHHCCCCC PRTLKTLTSSVSSLFPKGISEADLAALVQQLQSTGKVTVEGSKVTYAL CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEC >Mature Secondary Structure PTKPLDRLMFVQGGVCFFCKQPLPKAEASVEHLLASANGGGNSDENCVACCKAVNALLG CCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH SMSLKEKFQVVLNQKGQFKCPNGAGSAKAAAKPKAPAIAKPKDDKLALVIANLKQRGNSK CHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEHEEHHHHCCCCC PRTLKTLTSSVSSLFPKGISEADLAALVQQLQSTGKVTVEGSKVTYAL CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA