| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yceI [C]
Identifier: 74317050
GI number: 74317050
Start: 1097401
End: 1097799
Strand: Direct
Name: yceI [C]
Synonym: Tbd_1032
Alternate gene names: 74317050
Gene position: 1097401-1097799 (Clockwise)
Preceding gene: 74317049
Following gene: 74317051
Centisome position: 37.71
GC content: 65.91
Gene sequence:
>399_bases GTGCGGATCGACGTCTCCTCGGTCGATACGGGGGCTGCGTCCCTGAACGAAACGCTATTGGGCGCGGATTTCTTCGACAG CGCCAACCATCCGGCCATCACCTTCCGCTCGACACAGATGACGCTCGACGGCGAGCATCCGACGCTCAGCGGCGACCTCA GCATCAAGGGCGTGACCCGGCGTGTGACGCTCGCACTCGGCAGTTTCCGCTGCGCCGCCGACGAGACCTTCAAGGCCGAC GTGTGTCTCGCGCAGGCGAGCGTGACGATCCGGCGTTCGGATTTCAACATGCGCAAATACGCCTTCCTCGTCGGCGACGA GGTTCGGCTCACCCTGGCCCTGCGCGCGGTCAAGGAGACACCGGCACTGCACCTCGCGCGCGGCGATCCCGCCAGGTAA
Upstream 100 bases:
>100_bases GCTATCGCAGCCTGGGGTTCGTCACGCGCGCACGCACCGCTTCGAAAGAATCAGCGGCACACTCATCGTCGACCGTGCCG CGCGCACCGGTCGCGCCGAC
Downstream 100 bases:
>100_bases TAGGTAAAATGGCGTTTTGCCGCATGGAACGCCCAGTGGACCCGCATCAACTCGAACTGCTCGCGCCTGCGCGCGACGCC GATATCGGTATAGAGGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: YceI Like Family Protein; Signal Peptide Protein; YceI Like Family; Signal Peptide; Ycei Family Protein; Periplasmic Protein; Protein YceI
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MRIDVSSVDTGAASLNETLLGADFFDSANHPAITFRSTQMTLDGEHPTLSGDLSIKGVTRRVTLALGSFRCAADETFKAD VCLAQASVTIRRSDFNMRKYAFLVGDEVRLTLALRAVKETPALHLARGDPAR
Sequences:
>Translated_132_residues MRIDVSSVDTGAASLNETLLGADFFDSANHPAITFRSTQMTLDGEHPTLSGDLSIKGVTRRVTLALGSFRCAADETFKAD VCLAQASVTIRRSDFNMRKYAFLVGDEVRLTLALRAVKETPALHLARGDPAR >Mature_132_residues MRIDVSSVDTGAASLNETLLGADFFDSANHPAITFRSTQMTLDGEHPTLSGDLSIKGVTRRVTLALGSFRCAADETFKAD VCLAQASVTIRRSDFNMRKYAFLVGDEVRLTLALRAVKETPALHLARGDPAR
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787295, Length=117, Percent_Identity=31.6239316239316, Blast_Score=62, Evalue=1e-11,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14299; Mature: 14299
Theoretical pI: Translated: 7.52; Mature: 7.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIDVSSVDTGAASLNETLLGADFFDSANHPAITFRSTQMTLDGEHPTLSGDLSIKGVTR CEEECCCCCCCCCCCCHHEECCCCCCCCCCCEEEEEEEEEEECCCCCEECCCEEEEEEEE RVTLALGSFRCAADETFKADVCLAQASVTIRRSDFNMRKYAFLVGDEVRLTLALRAVKET EEEEEECCEEECCCCCEECEEEEEEEEEEEEECCCCCEEEEEEECCCEEEEEEEEEHHCC PALHLARGDPAR CEEEEECCCCCC >Mature Secondary Structure MRIDVSSVDTGAASLNETLLGADFFDSANHPAITFRSTQMTLDGEHPTLSGDLSIKGVTR CEEECCCCCCCCCCCCHHEECCCCCCCCCCCEEEEEEEEEEECCCCCEECCCEEEEEEEE RVTLALGSFRCAADETFKADVCLAQASVTIRRSDFNMRKYAFLVGDEVRLTLALRAVKET EEEEEECCEEECCCCCEECEEEEEEEEEEEEECCCCCEEEEEEECCCEEEEEEEEEHHCC PALHLARGDPAR CEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA