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The map label for this gene is ydcP [H]

Identifier: 74317051

GI number: 74317051

Start: 1097808

End: 1099811

Strand: Direct

Name: ydcP [H]

Synonym: Tbd_1033

Alternate gene names: 74317051

Gene position: 1097808-1099811 (Clockwise)

Preceding gene: 74317050

Following gene: 74317053

Centisome position: 37.73

GC content: 66.72

Gene sequence:

>2004_bases
ATGGCGTTTTGCCGCATGGAACGCCCAGTGGACCCGCATCAACTCGAACTGCTCGCGCCTGCGCGCGACGCCGATATCGG
TATAGAGGCCGTCAATCACGGCGCCGACGCGGTCTACATCGGCGGCCCCGCGTTCGGCGCGCGGGCGGCAGCGTGCAACG
ATATCGCCGACATCGCACGGCTCGTCGCACACGCCCATCGCTTCAACGCGCGCGTGTTCGCCACGCTCAACACCATTCTC
GCCGACGACGAACTCGAGCCGGCACGTCGCCAGATCTGGCAGCTTTACGAAGCCGGCGTCGACGCGCTGATCATCCAGGA
CATGGGACTCCTGCAGCTCGACCTGCCGCCGATCCAGCTGCACGCGAGCACCCAGTGCGACATCCGCACGCCGGAGAAGG
CGCGCTTCCTGCAGGATGTCGGGCTGTCGCAACTCGTGCTCGCACGCGAACTCGATCTCCGGGAGATCGCCGCGATCCGC
GCCGCGACCGATCCGGCGACCACGCTCGAATTCTTCGTCCACGGCGCGCTGTGCGTGGCCTACAGCGGGCAGTGCTACAT
CAGCCATGCCCACACCGGGCGCAGCGCCAATCGCGGGGACTGCTCGCAGGCCTGCCGCCTGCCGTATCAGGTCACCGACA
TGGAGGGCCGCATCGTCGCGCACGACAAACACGTGCTGTCGATGAAGGACAACAATCAGAGTCGGAACCTCGAGGCGCTC
GTCGACGCCGGCATCCGCAGCTTCAAGATCGAGGGGCGCTACAAGGACATGGGCTACGTGAAGAACATCACCGCCCACTA
CCGCGTTCTGCTCGACGAGATCCTCGAACGGCGCCCGGAATTCGCCCGCGCCTCGTCCGGGCGTACGTCGTTCAGCTTCA
CGCCGGATCCCAACCAGAACTTCAATCGCGAGTTCACCGACTACTTCGTGGAAGGCCGCAAGGCCGACATCGGTGCGTTC
GACACGCCCAAGAATCCCGGCTTGCCGATCGGTCACGTCGTCAAGGTCGCTGACAAATGGCTCGAGGTGCGGGTCGATGC
GGCCGATCTCGTGCTCAACAACGGCGACGGGCTGTGCTACTACACGCTGCAGAAGGAGTTGGCCGGTCTCGCCATCAACC
GCGCCGAAAAAGCGGGCGAGGGCCTGTGGCGCGTGTTCCCCAAGGATCCGATCGCAGGCTTCAAGGACTTGCGCGCCGGA
ACCCCGGTCAACCGCAACCGCGACATGAACTGGACGCGCCTGCTCGCCCGACCGTCGAGCGAACGCCGCATCGCGGTCTG
GCTGCGCTTTGGGGAAACGGCGGATGGCTTCGCGCTGACATTGACCGACGAGGACGGCCACACCGCGACCGTCTCAGCGC
CTCACGCCAAGGAGGCGGCAAAGGACGCCGCGAAAAGCGAGCCGATGCTCCGCGAGCAACTCGGAAAACTCGGCGGGACG
CCTTTCGCCGCGACCGGCATTGCGCTCGAACTGAGCGCGTCCTGGTTTCTCCCCCCGTCGTTTCTCAATGCCCTGCGCCG
CGACGCCGTCTCGGCGCTCGAGACCGCGCGCGCCCGCGCCTACGAACGCCCGCCGCGAGCGCGACCGATCGAGCCGCCGG
TCGTCTACCCGGAGGACACGCTCTCGTATCTCGCCAATGTCGCCAACAGCAAAGCGCGCGACTTTTACCTCAGGCACGGC
GTCCGGGTCGTCGCCGCCGCTTATGAAGGGCACGCGGAGACGGGCGAGGTGTCGCTGATGATCACGCGCCACTGCGTGCG
CTATTCGCTGTCGCTGTGCCCGAAGCAGGCCAAGGGCGTGACTGGCGTGCAGGGGACGGTGCGCGCCGCGCCGCTGACCC
TCGTCAACGGCAGCGAAAAGCTCACCCTGCGCTTCGACTGCAAGCGCTGCGAGATGCACGTGCTCGGAAAGCTCAAGCCC
GCGGTGGCGCGGCAGACGGCGCCGCTGACCTTTTATCGCTCGCGTCCTTCGGCGGCAGGCGACAACGCGGCGACCGGCAC
GTGA

Upstream 100 bases:

>100_bases
TCGTCGGCGACGAGGTTCGGCTCACCCTGGCCCTGCGCGCGGTCAAGGAGACACCGGCACTGCACCTCGCGCGCGGCGAT
CCCGCCAGGTAATAGGTAAA

Downstream 100 bases:

>100_bases
GCCCTCACGACGCGTCCCGCCCGACGCTGGCCCCGAGCGTCGCCATGAACGCCGTATGCTGCGCCTCCGCGTTCTGGAAC
ACGATGATCAGCCGTTCTGC

Product: collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 667; Mature: 666

Protein sequence:

>667_residues
MAFCRMERPVDPHQLELLAPARDADIGIEAVNHGADAVYIGGPAFGARAAACNDIADIARLVAHAHRFNARVFATLNTIL
ADDELEPARRQIWQLYEAGVDALIIQDMGLLQLDLPPIQLHASTQCDIRTPEKARFLQDVGLSQLVLARELDLREIAAIR
AATDPATTLEFFVHGALCVAYSGQCYISHAHTGRSANRGDCSQACRLPYQVTDMEGRIVAHDKHVLSMKDNNQSRNLEAL
VDAGIRSFKIEGRYKDMGYVKNITAHYRVLLDEILERRPEFARASSGRTSFSFTPDPNQNFNREFTDYFVEGRKADIGAF
DTPKNPGLPIGHVVKVADKWLEVRVDAADLVLNNGDGLCYYTLQKELAGLAINRAEKAGEGLWRVFPKDPIAGFKDLRAG
TPVNRNRDMNWTRLLARPSSERRIAVWLRFGETADGFALTLTDEDGHTATVSAPHAKEAAKDAAKSEPMLREQLGKLGGT
PFAATGIALELSASWFLPPSFLNALRRDAVSALETARARAYERPPRARPIEPPVVYPEDTLSYLANVANSKARDFYLRHG
VRVVAAAYEGHAETGEVSLMITRHCVRYSLSLCPKQAKGVTGVQGTVRAAPLTLVNGSEKLTLRFDCKRCEMHVLGKLKP
AVARQTAPLTFYRSRPSAAGDNAATGT

Sequences:

>Translated_667_residues
MAFCRMERPVDPHQLELLAPARDADIGIEAVNHGADAVYIGGPAFGARAAACNDIADIARLVAHAHRFNARVFATLNTIL
ADDELEPARRQIWQLYEAGVDALIIQDMGLLQLDLPPIQLHASTQCDIRTPEKARFLQDVGLSQLVLARELDLREIAAIR
AATDPATTLEFFVHGALCVAYSGQCYISHAHTGRSANRGDCSQACRLPYQVTDMEGRIVAHDKHVLSMKDNNQSRNLEAL
VDAGIRSFKIEGRYKDMGYVKNITAHYRVLLDEILERRPEFARASSGRTSFSFTPDPNQNFNREFTDYFVEGRKADIGAF
DTPKNPGLPIGHVVKVADKWLEVRVDAADLVLNNGDGLCYYTLQKELAGLAINRAEKAGEGLWRVFPKDPIAGFKDLRAG
TPVNRNRDMNWTRLLARPSSERRIAVWLRFGETADGFALTLTDEDGHTATVSAPHAKEAAKDAAKSEPMLREQLGKLGGT
PFAATGIALELSASWFLPPSFLNALRRDAVSALETARARAYERPPRARPIEPPVVYPEDTLSYLANVANSKARDFYLRHG
VRVVAAAYEGHAETGEVSLMITRHCVRYSLSLCPKQAKGVTGVQGTVRAAPLTLVNGSEKLTLRFDCKRCEMHVLGKLKP
AVARQTAPLTFYRSRPSAAGDNAATGT
>Mature_666_residues
AFCRMERPVDPHQLELLAPARDADIGIEAVNHGADAVYIGGPAFGARAAACNDIADIARLVAHAHRFNARVFATLNTILA
DDELEPARRQIWQLYEAGVDALIIQDMGLLQLDLPPIQLHASTQCDIRTPEKARFLQDVGLSQLVLARELDLREIAAIRA
ATDPATTLEFFVHGALCVAYSGQCYISHAHTGRSANRGDCSQACRLPYQVTDMEGRIVAHDKHVLSMKDNNQSRNLEALV
DAGIRSFKIEGRYKDMGYVKNITAHYRVLLDEILERRPEFARASSGRTSFSFTPDPNQNFNREFTDYFVEGRKADIGAFD
TPKNPGLPIGHVVKVADKWLEVRVDAADLVLNNGDGLCYYTLQKELAGLAINRAEKAGEGLWRVFPKDPIAGFKDLRAGT
PVNRNRDMNWTRLLARPSSERRIAVWLRFGETADGFALTLTDEDGHTATVSAPHAKEAAKDAAKSEPMLREQLGKLGGTP
FAATGIALELSASWFLPPSFLNALRRDAVSALETARARAYERPPRARPIEPPVVYPEDTLSYLANVANSKARDFYLRHGV
RVVAAAYEGHAETGEVSLMITRHCVRYSLSLCPKQAKGVTGVQGTVRAAPLTLVNGSEKLTLRFDCKRCEMHVLGKLKPA
VARQTAPLTFYRSRPSAAGDNAATGT

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=639, Percent_Identity=56.6510172143975, Blast_Score=724, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=314, Percent_Identity=29.9363057324841, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1789548, Length=295, Percent_Identity=26.7796610169492, Blast_Score=83, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 73331; Mature: 73200

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFCRMERPVDPHQLELLAPARDADIGIEAVNHGADAVYIGGPAFGARAAACNDIADIAR
CCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHH
LVAHAHRFNARVFATLNTILADDELEPARRQIWQLYEAGVDALIIQDMGLLQLDLPPIQL
HHHHHHHCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEE
HASTQCDIRTPEKARFLQDVGLSQLVLARELDLREIAAIRAATDPATTLEFFVHGALCVA
ECCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCEEEEE
YSGQCYISHAHTGRSANRGDCSQACRLPYQVTDMEGRIVAHDKHVLSMKDNNQSRNLEAL
ECCEEEEEECCCCCCCCCCCHHHHHCCCEEEECCCCEEEEECCEEEEECCCCCCCCHHHH
VDAGIRSFKIEGRYKDMGYVKNITAHYRVLLDEILERRPEFARASSGRTSFSFTPDPNQN
HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCC
FNREFTDYFVEGRKADIGAFDTPKNPGLPIGHVVKVADKWLEVRVDAADLVLNNGDGLCY
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECHHHEEEECCCCEEE
YTLQKELAGLAINRAEKAGEGLWRVFPKDPIAGFKDLRAGTPVNRNRDMNWTRLLARPSS
EEEHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCCCCCCCCCCHHHHEECCCC
ERRIAVWLRFGETADGFALTLTDEDGHTATVSAPHAKEAAKDAAKSEPMLREQLGKLGGT
CCEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHCCCC
PFAATGIALELSASWFLPPSFLNALRRDAVSALETARARAYERPPRARPIEPPVVYPEDT
CEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCHHH
LSYLANVANSKARDFYLRHGVRVVAAAYEGHAETGEVSLMITRHCVRYSLSLCPKQAKGV
HHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHCCHHHCCC
TGVQGTVRAAPLTLVNGSEKLTLRFDCKRCEMHVLGKLKPAVARQTAPLTFYRSRPSAAG
CCCCCCEEECCEEEECCCCEEEEEEECCHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCC
DNAATGT
CCCCCCC
>Mature Secondary Structure 
AFCRMERPVDPHQLELLAPARDADIGIEAVNHGADAVYIGGPAFGARAAACNDIADIAR
CCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHHHHHHHHHH
LVAHAHRFNARVFATLNTILADDELEPARRQIWQLYEAGVDALIIQDMGLLQLDLPPIQL
HHHHHHHCCCEEEEEHHHHHCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEECCCCEEE
HASTQCDIRTPEKARFLQDVGLSQLVLARELDLREIAAIRAATDPATTLEFFVHGALCVA
ECCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCEEEEE
YSGQCYISHAHTGRSANRGDCSQACRLPYQVTDMEGRIVAHDKHVLSMKDNNQSRNLEAL
ECCEEEEEECCCCCCCCCCCHHHHHCCCEEEECCCCEEEEECCEEEEECCCCCCCCHHHH
VDAGIRSFKIEGRYKDMGYVKNITAHYRVLLDEILERRPEFARASSGRTSFSFTPDPNQN
HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEECCCCCCC
FNREFTDYFVEGRKADIGAFDTPKNPGLPIGHVVKVADKWLEVRVDAADLVLNNGDGLCY
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEECHHHEEEECCCCEEE
YTLQKELAGLAINRAEKAGEGLWRVFPKDPIAGFKDLRAGTPVNRNRDMNWTRLLARPSS
EEEHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHCCCCCCCCCCCCCHHHHEECCCC
ERRIAVWLRFGETADGFALTLTDEDGHTATVSAPHAKEAAKDAAKSEPMLREQLGKLGGT
CCEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHCCCC
PFAATGIALELSASWFLPPSFLNALRRDAVSALETARARAYERPPRARPIEPPVVYPEDT
CEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCHHH
LSYLANVANSKARDFYLRHGVRVVAAAYEGHAETGEVSLMITRHCVRYSLSLCPKQAKGV
HHHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHCCHHHCCC
TGVQGTVRAAPLTLVNGSEKLTLRFDCKRCEMHVLGKLKPAVARQTAPLTFYRSRPSAAG
CCCCCCEEECCEEEECCCCEEEEEEECCHHHHHHHHCCCHHHHHCCCCEEEEECCCCCCC
DNAATGT
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]