| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is fatA [H]
Identifier: 74316733
GI number: 74316733
Start: 753230
End: 755326
Strand: Reverse
Name: fatA [H]
Synonym: Tbd_0715
Alternate gene names: 74316733
Gene position: 755326-753230 (Counterclockwise)
Preceding gene: 74316734
Following gene: 74316732
Centisome position: 25.96
GC content: 66.48
Gene sequence:
>2097_bases ATGAAATTCCGTCTCTCCGCGCTGGCAGGCGCGCTTTCGCTCGCGTTCTCGGCGTCACCGGTCAACGCCCAGACTCCGCA GGAAAACCCGCCCGGCGAACTCGACACGGTCACCGTCTGGTCGGAATACGCGGGCAGCTTCAAGTCCGACACGGTCCAGG TCGGCACCTTCCGCGAGGCGTCGCCGCTCGACGTGCCGCAGACCAGCAACGTCGTGACGCGCGAAGTGCTCGACGCGCAG GCCGCGTCGACGCTGTTCGGCGCCTTGCGCAACACCGCGGGGGTCACCCGCTCGCAACTCAACGGCTCGACCTACGACAA CATCGCGATCCGCGGCATCCTGGTCGAGAACCGCGGCAACTACCGGCTCAACGGCTCCTTGCCGATCATCAACCTGATCG ATGTGCCGCTCGAAAACAAGGAGCGCGTCGAAGTGCTCAAGGGCGCCTCGTCGCTCTACTACGGCTTCGTGCCGCCGTCG GGCATCGTGAACCTCGTCACCAAGCGCGCGGGCAAGGACCCGGTGTCGAGCCTGGCGCTGTCGGCCAACCACTACGGCGG CGCCAATGTGCACGCCGACGTCGGCCGGCGCTTCGGTGAAGAGCAGCAGTTCGGCGCACGCGTCAATCTGCTTGCCGGCC GCGAGGATATCGGCGTCGACAACTACTCTGGCGACCGCTCCCTCGGCGCGGTCGCGTTCGACTGGCAGGCCAGCGACGCG CTGTCGTTCAAGCTCGACGTCGAGCACTACCGCAAGGACGTTTCCGAGCAAGCGGCGATCAAAGTGCTGGCCCCGAACGC AGACGGGACGATCACGCTGCCCGCCATTCCGGACGCCCGGACCAATCTTGCGGGCGAATGGCAGACCTACGACGCCGACG CGACCAACGTGCTCTTCCGTACCGACTACGTGCTGAGCGACGACTGGGGTTTGCTGCTCGAAGCCGGCCACGCGCAGACC AACCGCGACCGACGCTTCTCCCAGTTCGAGAACTACAACCTCGCGACCGGGGACGGCACGCTGAAAATCTTCTTCAGCCC GAACCAGGAATACGAGAACAGCAACTACCGCGCCGAGAGCTTCGGTCACATCCCCGGCACCTGGGTCAGCCACGACCTCT CGTTCGGCTACACCGCGAACCAGCGCGACCAGAATTCCCGTTCCGGCGGCAGCGTCAGCGTCGCGCAGAACCTCTACGAC CCGACCGAGGTGCCGGAACAGACCGCCCCCTCGGCCCCGAGCCACAACCCGTCCACGATCGAGGATCGCGGCTGGTATCT GTTCGACCGCATGTCTTTCGGCGAAAAGTGGCAACTCATGCTCGGCGCGCGCGCCAGCCGTTATGTGAGCGAAACGACGA GCACGCGCTACGAGGCGGACGACGTCAATCCGTCCGTCGCGATCATGTACAAGCCGGTCGCCGGCGTGTCGGTCTATGGC AGCTATCTCGAGGGCCTCGAGGAAAGCGGCCAGGCGCCGGCCCACCGCGCCAACGCCGGCGAGCTGCTGCCGCCTGCGCT GTCGAAGCAGAAGGAAATCGGCGTCAAGGCCGAGGTAGCGCAAGGCGTCCTGCTGCAGGCCGCGTATTTCGACATCGAGC GCCCCTCGACGACGGTCGACGCGTCCAACCGCTTCGTCCTCAACGGCCTCGCCCAGTACCGCGGCATCGAACTCGCGGCC AGCGGCGAAGTCACGCGCTACCTGGCGCTGATCGGGTCCGCCCTCTTTCTCGACGCCGAGCAGCAGAACGCAGCCAACCC GGCGACCTTCGGCAAGGTGCCGGACAATACGCCCGAGCGCACGGCGAGCCTGTTCGCGGAATACCGGCTGCCCGCTGTGC CGGGGCTCGCGCTGAGCGGCGGCCTCTACTACGTCGGCAAGCGCCCGGTGGACAACGAAAACCGCGCCTTCGTCGACGGC TACACGACGCTTTCGCTCGGCGCCCGCCACAGCACGAAGCTGAATGGCAAGCGCACGACCTTCCAGGCCGTCGTCGACAA TGTGACCAACGAAAGCTACTGGAGCACGGCGGGCAACGGCCTGCTCGGCGTCGGCGCGCCGCGCACGCTGAAGCTGACGG CAAAGGTCGAGTTCTGA
Upstream 100 bases:
>100_bases TCACGCCAGCCACTGACCCCTCCCGGCACGGAGGTGGGTCGCAGCCAGCAGCTTGCTTTGCGGCGACTTCCATCCTTCCA ACGAGAAAAAGGTCAGATCC
Downstream 100 bases:
>100_bases TCGCCACAGCAGGCCGCGTGTCGAACGCCGGGGCAAGGGAAGCCGCAGCGATGACGGCACGCCGCCTCGTCGTCAAGCTC CACCTCTATACGGGGCTCTT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: OM2 [H]
Number of amino acids: Translated: 698; Mature: 698
Protein sequence:
>698_residues MKFRLSALAGALSLAFSASPVNAQTPQENPPGELDTVTVWSEYAGSFKSDTVQVGTFREASPLDVPQTSNVVTREVLDAQ AASTLFGALRNTAGVTRSQLNGSTYDNIAIRGILVENRGNYRLNGSLPIINLIDVPLENKERVEVLKGASSLYYGFVPPS GIVNLVTKRAGKDPVSSLALSANHYGGANVHADVGRRFGEEQQFGARVNLLAGREDIGVDNYSGDRSLGAVAFDWQASDA LSFKLDVEHYRKDVSEQAAIKVLAPNADGTITLPAIPDARTNLAGEWQTYDADATNVLFRTDYVLSDDWGLLLEAGHAQT NRDRRFSQFENYNLATGDGTLKIFFSPNQEYENSNYRAESFGHIPGTWVSHDLSFGYTANQRDQNSRSGGSVSVAQNLYD PTEVPEQTAPSAPSHNPSTIEDRGWYLFDRMSFGEKWQLMLGARASRYVSETTSTRYEADDVNPSVAIMYKPVAGVSVYG SYLEGLEESGQAPAHRANAGELLPPALSKQKEIGVKAEVAQGVLLQAAYFDIERPSTTVDASNRFVLNGLAQYRGIELAA SGEVTRYLALIGSALFLDAEQQNAANPATFGKVPDNTPERTASLFAEYRLPAVPGLALSGGLYYVGKRPVDNENRAFVDG YTTLSLGARHSTKLNGKRTTFQAVVDNVTNESYWSTAGNGLLGVGAPRTLKLTAKVEF
Sequences:
>Translated_698_residues MKFRLSALAGALSLAFSASPVNAQTPQENPPGELDTVTVWSEYAGSFKSDTVQVGTFREASPLDVPQTSNVVTREVLDAQ AASTLFGALRNTAGVTRSQLNGSTYDNIAIRGILVENRGNYRLNGSLPIINLIDVPLENKERVEVLKGASSLYYGFVPPS GIVNLVTKRAGKDPVSSLALSANHYGGANVHADVGRRFGEEQQFGARVNLLAGREDIGVDNYSGDRSLGAVAFDWQASDA LSFKLDVEHYRKDVSEQAAIKVLAPNADGTITLPAIPDARTNLAGEWQTYDADATNVLFRTDYVLSDDWGLLLEAGHAQT NRDRRFSQFENYNLATGDGTLKIFFSPNQEYENSNYRAESFGHIPGTWVSHDLSFGYTANQRDQNSRSGGSVSVAQNLYD PTEVPEQTAPSAPSHNPSTIEDRGWYLFDRMSFGEKWQLMLGARASRYVSETTSTRYEADDVNPSVAIMYKPVAGVSVYG SYLEGLEESGQAPAHRANAGELLPPALSKQKEIGVKAEVAQGVLLQAAYFDIERPSTTVDASNRFVLNGLAQYRGIELAA SGEVTRYLALIGSALFLDAEQQNAANPATFGKVPDNTPERTASLFAEYRLPAVPGLALSGGLYYVGKRPVDNENRAFVDG YTTLSLGARHSTKLNGKRTTFQAVVDNVTNESYWSTAGNGLLGVGAPRTLKLTAKVEF >Mature_698_residues MKFRLSALAGALSLAFSASPVNAQTPQENPPGELDTVTVWSEYAGSFKSDTVQVGTFREASPLDVPQTSNVVTREVLDAQ AASTLFGALRNTAGVTRSQLNGSTYDNIAIRGILVENRGNYRLNGSLPIINLIDVPLENKERVEVLKGASSLYYGFVPPS GIVNLVTKRAGKDPVSSLALSANHYGGANVHADVGRRFGEEQQFGARVNLLAGREDIGVDNYSGDRSLGAVAFDWQASDA LSFKLDVEHYRKDVSEQAAIKVLAPNADGTITLPAIPDARTNLAGEWQTYDADATNVLFRTDYVLSDDWGLLLEAGHAQT NRDRRFSQFENYNLATGDGTLKIFFSPNQEYENSNYRAESFGHIPGTWVSHDLSFGYTANQRDQNSRSGGSVSVAQNLYD PTEVPEQTAPSAPSHNPSTIEDRGWYLFDRMSFGEKWQLMLGARASRYVSETTSTRYEADDVNPSVAIMYKPVAGVSVYG SYLEGLEESGQAPAHRANAGELLPPALSKQKEIGVKAEVAQGVLLQAAYFDIERPSTTVDASNRFVLNGLAQYRGIELAA SGEVTRYLALIGSALFLDAEQQNAANPATFGKVPDNTPERTASLFAEYRLPAVPGLALSGGLYYVGKRPVDNENRAFVDG YTTLSLGARHSTKLNGKRTTFQAVVDNVTNESYWSTAGNGLLGVGAPRTLKLTAKVEF
Specific function: Anguibactin receptor, essential component of the iron uptake system of V.anguillarum [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=754, Percent_Identity=23.7400530503979, Blast_Score=125, Evalue=8e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 75569; Mature: 75569
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFRLSALAGALSLAFSASPVNAQTPQENPPGELDTVTVWSEYAGSFKSDTVQVGTFREA CCEEHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCCEEEEECCCCC SPLDVPQTSNVVTREVLDAQAASTLFGALRNTAGVTRSQLNGSTYDNIAIRGILVENRGN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEEECCCC YRLNGSLPIINLIDVPLENKERVEVLKGASSLYYGFVPPSGIVNLVTKRAGKDPVSSLAL EEECCCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHEE SANHYGGANVHADVGRRFGEEQQFGARVNLLAGREDIGVDNYSGDRSLGAVAFDWQASDA ECCCCCCCCEEHHHHHHCCCCHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCC LSFKLDVEHYRKDVSEQAAIKVLAPNADGTITLPAIPDARTNLAGEWQTYDADATNVLFR EEEEEEHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEECCCCCEEEEE TDYVLSDDWGLLLEAGHAQTNRDRRFSQFENYNLATGDGTLKIFFSPNQEYENSNYRAES ECEEEECCCCEEEECCCCCCCCCHHHHHHCCCEEECCCCEEEEEECCCCCCCCCCCCHHH FGHIPGTWVSHDLSFGYTANQRDQNSRSGGSVSVAQNLYDPTEVPEQTAPSAPSHNPSTI CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCHHCCCCCCCCCCCCC EDRGWYLFDRMSFGEKWQLMLGARASRYVSETTSTRYEADDVNPSVAIMYKPVAGVSVYG CCCCEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEECCCCCCCEEEEEECCCCHHHHH SYLEGLEESGQAPAHRANAGELLPPALSKQKEIGVKAEVAQGVLLQAAYFDIERPSTTVD HHHHHHHHCCCCCCCCCCCCCCCCCHHCHHHHCCCHHHHHCCCEEEEEEEECCCCCCEEC ASNRFVLNGLAQYRGIELAASGEVTRYLALIGSALFLDAEQQNAANPATFGKVPDNTPER CCCCEEEECHHHHCCEEEEECCCHHHHHHHHHHHHEEECHHCCCCCCCCCCCCCCCCHHH TASLFAEYRLPAVPGLALSGGLYYVGKRPVDNENRAFVDGYTTLSLGARHSTKLNGKRTT HHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCEEEECEEEEEECCCCCCCCCCCHHH FQAVVDNVTNESYWSTAGNGLLGVGAPRTLKLTAKVEF HHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEECC >Mature Secondary Structure MKFRLSALAGALSLAFSASPVNAQTPQENPPGELDTVTVWSEYAGSFKSDTVQVGTFREA CCEEHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCCCEEEEECCCCC SPLDVPQTSNVVTREVLDAQAASTLFGALRNTAGVTRSQLNGSTYDNIAIRGILVENRGN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEEECCCC YRLNGSLPIINLIDVPLENKERVEVLKGASSLYYGFVPPSGIVNLVTKRAGKDPVSSLAL EEECCCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCHHHHEE SANHYGGANVHADVGRRFGEEQQFGARVNLLAGREDIGVDNYSGDRSLGAVAFDWQASDA ECCCCCCCCEEHHHHHHCCCCHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCC LSFKLDVEHYRKDVSEQAAIKVLAPNADGTITLPAIPDARTNLAGEWQTYDADATNVLFR EEEEEEHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEECCCCCEEEEE TDYVLSDDWGLLLEAGHAQTNRDRRFSQFENYNLATGDGTLKIFFSPNQEYENSNYRAES ECEEEECCCCEEEECCCCCCCCCHHHHHHCCCEEECCCCEEEEEECCCCCCCCCCCCHHH FGHIPGTWVSHDLSFGYTANQRDQNSRSGGSVSVAQNLYDPTEVPEQTAPSAPSHNPSTI CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEHHHHCCCCCCCCHHCCCCCCCCCCCCC EDRGWYLFDRMSFGEKWQLMLGARASRYVSETTSTRYEADDVNPSVAIMYKPVAGVSVYG CCCCEEEEEECCCCCCEEEEECCHHHHHHHHHCCCCEECCCCCCCEEEEEECCCCHHHHH SYLEGLEESGQAPAHRANAGELLPPALSKQKEIGVKAEVAQGVLLQAAYFDIERPSTTVD HHHHHHHHCCCCCCCCCCCCCCCCCHHCHHHHCCCHHHHHCCCEEEEEEEECCCCCCEEC ASNRFVLNGLAQYRGIELAASGEVTRYLALIGSALFLDAEQQNAANPATFGKVPDNTPER CCCCEEEECHHHHCCEEEEECCCHHHHHHHHHHHHEEECHHCCCCCCCCCCCCCCCCHHH TASLFAEYRLPAVPGLALSGGLYYVGKRPVDNENRAFVDGYTTLSLGARHSTKLNGKRTT HHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCEEEECEEEEEECCCCCCCCCCCHHH FQAVVDNVTNESYWSTAGNGLLGVGAPRTLKLTAKVEF HHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2830268; 13129954; 2311935 [H]