Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is cbbYC [H]

Identifier: 74316708

GI number: 74316708

Start: 730430

End: 731191

Strand: Reverse

Name: cbbYC [H]

Synonym: Tbd_0690

Alternate gene names: 74316708

Gene position: 731191-730430 (Counterclockwise)

Preceding gene: 74316711

Following gene: 74316706

Centisome position: 25.13

GC content: 67.06

Gene sequence:

>762_bases
ATGACATTACGCGCCCTATTATTCGACGTGGACGGCACCCTTGCCGATACCGAACGGGACGGCCACCGGCCGGCCTTCAA
TCAAGCCTTCGCCGACGCCGGACTCGACTGGCAGTGGGACGTGGATCTGTACGGCAAACTGCTCGCCGTCACCGGCGGAA
AAGAGCGGATGAAACACTACATCGAAGCCTTCCGCCCCGACTATCGGCGGCCGGACAATTTCGACGAAATGGTCGCGAAA
CTGCATCAGGCCAAAACACGTATCTACGCCGACCTCGCCGCTCGTGGTGGTATTCCCATGCGCCCCGGCGTCCGGCGCCT
GCTCGAGGAGGCGCGCGCCGCAGGCCTGCGCCTTGCGATCGCGACGACGACGACGCCGGAAAACGTCACCGTTCTGCTCG
AACACAGCCTCGGCCCGGGCACCCAGGAGTGGTTCGAGGTGATCGCCGCCGGCGACGTCGTCCCCGCGAAGAAGCCCGCC
CCCGACATCTATCACTACGCGTTGGAGGCGATGGGGCTTGCGGCCGCGGACTGCCTCGCGTTCGAGGACTCGGAGAACGG
CCTGCGCGCGAGCCTCGGCGCCGGACTCAAAACCCTCGTGACGGTCAACGACTACACGCTCGACCACGATTTCAGCGGCG
CGGCCGCCGTGCTCTCCGATCTCGGCGAGCCCGAGGCCCCGGCGCGCCGCCTGACCGGCCCCGCCCTCCCCGGCCCCTGC
GTCGACGTCGCCTATCTCAAAACGCTGCATCGCAGCCAGTGA

Upstream 100 bases:

>100_bases
ATCAAAGTTTCAGCCATCTCGTTCTCTTCGAAAATTCACAGTTCCGGGGCAAGCCCAACCCCGACTTAATATCAGAATCG
CATTCCTGCCGCAACCCGAA

Downstream 100 bases:

>100_bases
TGAGGGGTCAGGATGCAGGGATCAGAATTCAGGGAGCGAAGCCGAATTAGCGCCACCCCTGACCCCCAGCCCCTGGCCCC
TAGCCCCTAGCGCCTAGCGC

Product: HAD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHYIEAFRPDYRRPDNFDEMVAK
LHQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAIATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPA
PDIYHYALEAMGLAAADCLAFEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPC
VDVAYLKTLHRSQ

Sequences:

>Translated_253_residues
MTLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHYIEAFRPDYRRPDNFDEMVAK
LHQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAIATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPA
PDIYHYALEAMGLAAADCLAFEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPC
VDVAYLKTLHRSQ
>Mature_252_residues
TLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHYIEAFRPDYRRPDNFDEMVAKL
HQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAIATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPAP
DIYHYALEAMGLAAADCLAFEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPCV
DVAYLKTLHRSQ

Specific function: Unknown

COG id: COG0637

COG function: function code R; Predicted phosphatase/phosphohexomutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006402
- InterPro:   IPR005833 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 27510; Mature: 27379

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHY
CCCEEEEEECCCCEECCCCCCCCCHHHHHHHHCCCCEEECHHHHCEEEEECCCHHHHHHH
IEAFRPDYRRPDNFDEMVAKLHQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAI
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEE
ATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPAPDIYHYALEAMGLAAADCLA
EECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHE
FEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPC
ECCCCCCCHHHHCCCCEEEEEEECEEECCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCH
VDVAYLKTLHRSQ
HHHHHHHHHHCCC
>Mature Secondary Structure 
TLRALLFDVDGTLADTERDGHRPAFNQAFADAGLDWQWDVDLYGKLLAVTGGKERMKHY
CCEEEEEECCCCEECCCCCCCCCHHHHHHHHCCCCEEECHHHHCEEEEECCCHHHHHHH
IEAFRPDYRRPDNFDEMVAKLHQAKTRIYADLAARGGIPMRPGVRRLLEEARAAGLRLAI
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEE
ATTTTPENVTVLLEHSLGPGTQEWFEVIAAGDVVPAKKPAPDIYHYALEAMGLAAADCLA
EECCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHE
FEDSENGLRASLGAGLKTLVTVNDYTLDHDFSGAAAVLSDLGEPEAPARRLTGPALPGPC
ECCCCCCCHHHHCCCCEEEEEEECEEECCCCCHHHHHHHHCCCCCCCHHHCCCCCCCCCH
VDVAYLKTLHRSQ
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1429456 [H]