Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is ybbP [H]

Identifier: 74316702

GI number: 74316702

Start: 724165

End: 726654

Strand: Reverse

Name: ybbP [H]

Synonym: Tbd_0684

Alternate gene names: 74316702

Gene position: 726654-724165 (Counterclockwise)

Preceding gene: 74316703

Following gene: 74316700

Centisome position: 24.97

GC content: 71.29

Gene sequence:

>2490_bases
ATGAATTTCCTTCGGCTCGGGCTGTGGATGCTGCGCCGCGAGGGCAGGCAGAAAGGCTTCGCCGCCAGCGGCGAGTGGCG
CGTGTTGCTGCTCGCCCTGGTCATCGGCGTCGGCAGCGTGTCGACGACGGGCTTCCTCGGCGACCGCCTGAAGCGCGCGA
TGAACGAGCAGGGCGCGAGCTTTCTCGGCGCCGACCTGCTCGTCACGAGCCCGCGTCGCATCGAGGCGTGGCCGGACCAC
GCGCTTCGTCGTTCGGCCGCGCTCGATTTCACGAGCATGGTCAGCCGCGGCGACGCGTTCCAGCTCGCCGCCGTGCGCGC
CGTCGACGCACGCTACCCGCTGCGCGGCAGCGTGCGGATCGCCGAACGCGCCTTCGCGCCAGGCAACGCCCGCCCCGCGC
TACCGCCCCGGGGCGCCGTGTTCGTCGATCAGGCGCTGTTGCCGCTCCTCGACGCGCAAGTCGGCGATCGCGTCCGCATC
GGCGAAGCCGAATTTCGCATCGCCGGCGTCGTGGTCGAAGAGCCGGGCCAGCTCGGCGGCGTGTTCGGACTCGCGCCGCG
CGTGTTCCTGCGCTCCGACGAACTCGCGCAAACGCGCATCGTGCAGCCGGGAAGCCGCGTCACCCACGTCTATCAGTTCG
CCGGCGAACCCGCGGCGCTCGCGGCCTTCGCCCGCGCGCTCAAGCCGCGCCTCGACAGCACCCAGCGCCTGATCGGTTCG
CGTGAAGGCGTCGAGACGCTGCGCGGCGCGTTCGCGAACGCCGATCGCTACATCCAGCTCACGGCGCTGATCAGCCTGCT
GCTATCGGTGGCGGCGATCGCGATCGCCGCGCGCCGCCACGCGCTGCGCCACTACGACCAGGCCGCGCTGCTGCGCTGCC
TCGGTGCGACGACCCGGCAGCTGCGCGTGCTATACGTCACGCAATTGCTCGTGCTCGGACTGCTGGGCAGCCTCCTCGGC
GTTGCAATCGGCGCGCTCATGCAGCAGGCGCTTGCCGGAATGCTGCTGCCGGACGCCGTCACCCGCCTGCCGGCGCTCGG
CTGGGCGCCGGTCGGCGCGGCCATCGCGAGCGGGCTGCTCGCGCTGGCCGGCGCCAGCCTGCCCGCGCTCGTGCGCCTGA
TCCGGGTGCCGCCGCTGCGCGTGTTGCGGCGCGACCTGCCGCCGCTGCCGCTGTCGGCGTGGATCAGCGCGACGACCAGC
GTGGGCGCGCTGCTCGTGCTGATCGCCTGCTACGCGGGCGACGCCCGGCTCGTCGGCGTTTTCGTTGCGGCGCTCGCCGC
ACTGGCCGGCGTGCTTGCCTTGCTGGCGCGTCTCGCTCTGCTCGCCGGCCGCGGCGTCCAGCTTCTCGCCCAGGGCCCCT
TGCGCTTTGGCCTGGCGCAACTCCTGCGTCATCGTTTCGACAGCAGCCTGCAACTCGGCGCCTTCACGCTCGCGCTGTTT
CTGGTCGCGCTGCTGGCGCTCGTGCGCAGCGACCTCGTCGCCGGCTGGCGCGCGCAATTGCCGCCGCAGGCGCCGAATTA
CTTCCTCGTGAACATCCCGCCGCACGAGCAGGACGCCGTAGCGTCCTACCTCGCCGCGCATGACCTGCGGGCGTCGACGA
TCTATCCGATGGTACGCGGCCGGCTGGTCACGAAAAACGGCGCGCCCATCGCCGAGACGCTGCCTCCCGAAGCGCGCAGC
AGCAACACGCTGCGGCGCGAACTCAACCTGACCTGGACCGCGGCGCTGCCCGCGAACAACGAGGTGCTCGACGGGCGCTG
GCACGGCGAGCGGCGCGGCGCAGAGATCTCGGTCGAGTCGGGGATGGCCGAGCGCCTGCAACTCGCGCTCGGCGACGCGC
TCGGTTTCCAGATCGGTGACCAGACGCTGGCGGCACGCATCACGAGCATCCGCAGCGTGAAATGGGATTCGATGCAGCCC
AACTTCTTCGTGATTTTCGCGCCTGGCCAGCTCGACGCCTTCCCGGCGAGTTCGATCGCGAGCGTCTACGTCTCGCCCCC
GGCGAAGCAGGCTCTGCCGGGCTTCGTCAAATCCTTTCCCGGCGTCACGGTGCTCGCGCTCGACAAGCTCATCGCGAATA
TCGAGGCCGTCTTCGCGCAGATCATCGGCGCGATCCAACTCTTGTTGGGGTTTCTGCTCGCCGCCGGCATGGCGGTCGTC
GTCGCGACGCTCCTCGCGAGTCTCGATGCCCGGCAGCAGGAAGCGGTGCTCTTGCGCACGCTCGGCGCCGAGCGCGCCTA
TCTGGCGAAGGCGCTGTGGAGCGAGTTCATCGTGCTCGGCGTGCTCGCGGGCCTGCTCGCGAGCGCCTGCGCCGAGGCCG
CGATGGCGCTGATCGGGGACCGCCTGTTCGAGCTGCCGCCGCGCCTGCACCCCTGGCTCTGGCTCGTGCTCCCGGCCGCC
GGCGCGCTGCTCGTCGGCGCGAGCGGCTGGCTGACCACGCGCCACATCACGCGCCTGCCGCCGATGCAGTCGATACGCGA
ACTCGCCTGA

Upstream 100 bases:

>100_bases
GCACGACCCTGATCCTCGTCACCCACGACGACGCGCTCGCCAGCCGCTGCCAGCGCCGTCTGCATCTCGTCGCCGGCCGC
GCGCGCGAAGTGGAGGCGGC

Downstream 100 bases:

>100_bases
GCGGCGGTTCCCGCGTCAGCAGTGCACGCGGCCGCCGAGCGGCTGCAGGTCGGCGCCGACCGCTTCGCGCGCGTCGAAGA
CGAAACACCCGCCGCGGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 829; Mature: 829

Protein sequence:

>829_residues
MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGASFLGADLLVTSPRRIEAWPDH
ALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRIAERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRI
GEAEFRIAGVVVEEPGQLGGVFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS
REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQLRVLYVTQLLVLGLLGSLLG
VAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLLALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTS
VGALLVLIACYAGDARLVGVFVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF
LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRGRLVTKNGAPIAETLPPEARS
SNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVESGMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQP
NFFVIFAPGQLDAFPASSIASVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV
VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGDRLFELPPRLHPWLWLVLPAA
GALLVGASGWLTTRHITRLPPMQSIRELA

Sequences:

>Translated_829_residues
MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGASFLGADLLVTSPRRIEAWPDH
ALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRIAERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRI
GEAEFRIAGVVVEEPGQLGGVFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS
REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQLRVLYVTQLLVLGLLGSLLG
VAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLLALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTS
VGALLVLIACYAGDARLVGVFVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF
LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRGRLVTKNGAPIAETLPPEARS
SNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVESGMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQP
NFFVIFAPGQLDAFPASSIASVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV
VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGDRLFELPPRLHPWLWLVLPAA
GALLVGASGWLTTRHITRLPPMQSIRELA
>Mature_829_residues
MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGASFLGADLLVTSPRRIEAWPDH
ALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRIAERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRI
GEAEFRIAGVVVEEPGQLGGVFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS
REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQLRVLYVTQLLVLGLLGSLLG
VAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLLALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTS
VGALLVLIACYAGDARLVGVFVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF
LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRGRLVTKNGAPIAETLPPEARS
SNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVESGMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQP
NFFVIFAPGQLDAFPASSIASVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV
VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGDRLFELPPRLHPWLWLVLPAA
GALLVGASGWLTTRHITRLPPMQSIRELA

Specific function: Unknown

COG id: COG3127

COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

Organism=Escherichia coli, GI1786704, Length=815, Percent_Identity=33.7423312883436, Blast_Score=370, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 88423; Mature: 88423

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGAS
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH
FLGADLLVTSPRRIEAWPDHALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRI
HHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHH
AERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRIGEAEFRIAGVVVEEPGQLGG
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEEECCCCCCC
VFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS
HHHCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCC
REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQ
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LRVLYVTQLLVLGLLGSLLGVAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTSVGALLVLIACYAGDARLVGV
HHHCCCHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF
HHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRG
HHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCC
RLVTKNGAPIAETLPPEARSSNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVES
EEEECCCCCCHHCCCCCCCCCCHHHHHCCEEEEEECCCCCCEECCCCCCCCCCCEEEHHC
GMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQPNFFVIFAPGQLDAFPASSIA
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHH
SVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV
EEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGD
HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLFELPPRLHPWLWLVLPAAGALLVGASGWLTTRHITRLPPMQSIRELA
HHHHCCCCCCHHHHHHHHHCCCEEECCCCCEEHHHHHCCCCHHHHHHCC
>Mature Secondary Structure
MNFLRLGLWMLRREGRQKGFAASGEWRVLLLALVIGVGSVSTTGFLGDRLKRAMNEQGAS
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH
FLGADLLVTSPRRIEAWPDHALRRSAALDFTSMVSRGDAFQLAAVRAVDARYPLRGSVRI
HHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHH
AERAFAPGNARPALPPRGAVFVDQALLPLLDAQVGDRVRIGEAEFRIAGVVVEEPGQLGG
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCEEEEEEEEECCCCCCC
VFGLAPRVFLRSDELAQTRIVQPGSRVTHVYQFAGEPAALAAFARALKPRLDSTQRLIGS
HHHCCCHHHCCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCC
REGVETLRGAFANADRYIQLTALISLLLSVAAIAIAARRHALRHYDQAALLRCLGATTRQ
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
LRVLYVTQLLVLGLLGSLLGVAIGALMQQALAGMLLPDAVTRLPALGWAPVGAAIASGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALAGASLPALVRLIRVPPLRVLRRDLPPLPLSAWISATTSVGALLVLIACYAGDARLVGV
HHHCCCHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FVAALAALAGVLALLARLALLAGRGVQLLAQGPLRFGLAQLLRHRFDSSLQLGAFTLALF
HHHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHH
LVALLALVRSDLVAGWRAQLPPQAPNYFLVNIPPHEQDAVASYLAAHDLRASTIYPMVRG
HHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCC
RLVTKNGAPIAETLPPEARSSNTLRRELNLTWTAALPANNEVLDGRWHGERRGAEISVES
EEEECCCCCCHHCCCCCCCCCCHHHHHCCEEEEEECCCCCCEECCCCCCCCCCCEEEHHC
GMAERLQLALGDALGFQIGDQTLAARITSIRSVKWDSMQPNFFVIFAPGQLDAFPASSIA
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHH
SVYVSPPAKQALPGFVKSFPGVTVLALDKLIANIEAVFAQIIGAIQLLLGFLLAAGMAVV
EEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VATLLASLDARQQEAVLLRTLGAERAYLAKALWSEFIVLGVLAGLLASACAEAAMALIGD
HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLFELPPRLHPWLWLVLPAAGALLVGASGWLTTRHITRLPPMQSIRELA
HHHHCCCCCCHHHHHHHHHCCCEEECCCCCEEHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]