| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316584
Identifier: 74316584
GI number: 74316584
Start: 594810
End: 595277
Strand: Reverse
Name: 74316584
Synonym: Tbd_0566
Alternate gene names: NA
Gene position: 595277-594810 (Counterclockwise)
Preceding gene: 74316585
Following gene: 74316583
Centisome position: 20.46
GC content: 65.6
Gene sequence:
>468_bases ATGAATGCACTTCGTAGAAACGTACTGAAAAGCGCTGCCGGCGCCGGTACTGTGGCCGTCGCCGTGGCTGCCGGCCTGCT CAAGCCGACCCAGGCGCTCGCCGCGTGGAACAAATCGGCCTTCGAGGCCAAGAACGTCGCCGACGCGATGAAAGGGCTGG GTTCCTCGGGCCCGTCCGACAGCAAGGACATCATGATCAAGGCGCCGGACATCGCCGAAAACGGCGCCGTCGTGCCGGTC GAGATCACCAGCAAGCTTCCCGACACGACCAGCATCGCGATCCTCGCCGAGAAGAACGCCAGCCCGCTGGTCGCCGAATA CGCGCTCGCCGGCGGCACGCAGGGCTATGTCTCGACGCGCATCAAAATGGGCCAGACCTCGCTCGTGCGCGCCGTCGTCA AGGCCGGCGGCAAGTCCTACACGGCGGCGAAGGAAGTGAAAGTCACCATCGGCGGTTGCGGCGGCTGA
Upstream 100 bases:
>100_bases CAAGCACGGGGTGTTGACGGAAGCCGAAATCGATAAGGTGACCGACTTCGTGTACGGTCTGTAATCATCCCTTGCATTGT TAATTCAGGAGATACACTCA
Downstream 100 bases:
>100_bases TCGAGCCCACCTGACCTCCCTCATTCATATTCAGGAAAGGAAGCCAAATGGCTGAACCCATGCGTATCCGCGCCACCATG TCGGGCGACGTCGCAGACGT
Product: transmembrane protein
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal; Sulfur Oxidation Protein; Tat Pathway Signal Sequence Domain Protein; Sulfur Oxidation Protein SoxY-Like Protein; Sulfur Oxidation Protein SoxY-Like; Sulfur Oxidation Protein SoxY; Secreted Protein-Like Protein; Tat Pathway Signal Sequence Domain-Containing Protein; Sulfur Oxidation Y Protein; Sulfur Oxidation Protein SoxY Domain-Containing Protein; Sulphur Oxidation Protein; Sulfur Compound-Chelating Protein SoxY; Secreted Protein
Number of amino acids: Translated: 155; Mature: 155
Protein sequence:
>155_residues MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSDSKDIMIKAPDIAENGAVVPV EITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTRIKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG
Sequences:
>Translated_155_residues MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSDSKDIMIKAPDIAENGAVVPV EITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTRIKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG >Mature_155_residues MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSDSKDIMIKAPDIAENGAVVPV EITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTRIKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG
Specific function: Unknown
COG id: COG5501
COG function: function code S; Predicted secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15543; Mature: 15543
Theoretical pI: Translated: 10.28; Mature: 10.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSD CCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC SKDIMIKAPDIAENGAVVPVEITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTR CCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEE IKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG EECCHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC >Mature Secondary Structure MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSD CCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC SKDIMIKAPDIAENGAVVPVEITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTR CCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEE IKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG EECCHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA