Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

Click here to switch to the map view.

The map label for this gene is 74316584

Identifier: 74316584

GI number: 74316584

Start: 594810

End: 595277

Strand: Reverse

Name: 74316584

Synonym: Tbd_0566

Alternate gene names: NA

Gene position: 595277-594810 (Counterclockwise)

Preceding gene: 74316585

Following gene: 74316583

Centisome position: 20.46

GC content: 65.6

Gene sequence:

>468_bases
ATGAATGCACTTCGTAGAAACGTACTGAAAAGCGCTGCCGGCGCCGGTACTGTGGCCGTCGCCGTGGCTGCCGGCCTGCT
CAAGCCGACCCAGGCGCTCGCCGCGTGGAACAAATCGGCCTTCGAGGCCAAGAACGTCGCCGACGCGATGAAAGGGCTGG
GTTCCTCGGGCCCGTCCGACAGCAAGGACATCATGATCAAGGCGCCGGACATCGCCGAAAACGGCGCCGTCGTGCCGGTC
GAGATCACCAGCAAGCTTCCCGACACGACCAGCATCGCGATCCTCGCCGAGAAGAACGCCAGCCCGCTGGTCGCCGAATA
CGCGCTCGCCGGCGGCACGCAGGGCTATGTCTCGACGCGCATCAAAATGGGCCAGACCTCGCTCGTGCGCGCCGTCGTCA
AGGCCGGCGGCAAGTCCTACACGGCGGCGAAGGAAGTGAAAGTCACCATCGGCGGTTGCGGCGGCTGA

Upstream 100 bases:

>100_bases
CAAGCACGGGGTGTTGACGGAAGCCGAAATCGATAAGGTGACCGACTTCGTGTACGGTCTGTAATCATCCCTTGCATTGT
TAATTCAGGAGATACACTCA

Downstream 100 bases:

>100_bases
TCGAGCCCACCTGACCTCCCTCATTCATATTCAGGAAAGGAAGCCAAATGGCTGAACCCATGCGTATCCGCGCCACCATG
TCGGGCGACGTCGCAGACGT

Product: transmembrane protein

Products: NA

Alternate protein names: Twin-Arginine Translocation Pathway Signal; Sulfur Oxidation Protein; Tat Pathway Signal Sequence Domain Protein; Sulfur Oxidation Protein SoxY-Like Protein; Sulfur Oxidation Protein SoxY-Like; Sulfur Oxidation Protein SoxY; Secreted Protein-Like Protein; Tat Pathway Signal Sequence Domain-Containing Protein; Sulfur Oxidation Y Protein; Sulfur Oxidation Protein SoxY Domain-Containing Protein; Sulphur Oxidation Protein; Sulfur Compound-Chelating Protein SoxY; Secreted Protein

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSDSKDIMIKAPDIAENGAVVPV
EITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTRIKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG

Sequences:

>Translated_155_residues
MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSDSKDIMIKAPDIAENGAVVPV
EITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTRIKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG
>Mature_155_residues
MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSDSKDIMIKAPDIAENGAVVPV
EITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTRIKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG

Specific function: Unknown

COG id: COG5501

COG function: function code S; Predicted secreted protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15543; Mature: 15543

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSD
CCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
SKDIMIKAPDIAENGAVVPVEITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTR
CCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEE
IKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG
EECCHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC
>Mature Secondary Structure
MNALRRNVLKSAAGAGTVAVAVAAGLLKPTQALAAWNKSAFEAKNVADAMKGLGSSGPSD
CCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
SKDIMIKAPDIAENGAVVPVEITSKLPDTTSIAILAEKNASPLVAEYALAGGTQGYVSTR
CCCEEEECCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEE
IKMGQTSLVRAVVKAGGKSYTAAKEVKVTIGGCGG
EECCHHHHHHHHHHCCCCCCCCEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA