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The map label for this gene is ybbN [H]

Identifier: 74316537

GI number: 74316537

Start: 549007

End: 549849

Strand: Direct

Name: ybbN [H]

Synonym: Tbd_0519

Alternate gene names: 74316537

Gene position: 549007-549849 (Clockwise)

Preceding gene: 74316536

Following gene: 74316540

Centisome position: 18.87

GC content: 69.16

Gene sequence:

>843_bases
ATGTCTGAACATGCTCTCGACGTCGGCCTGGCCGACTTTACCCAATGGGTGCTCGAGGAGTCGAAGCGCCGCCCGGTCGT
CGTCGACTTCTGGGCGCCGTGGTGCGGGCCGTGCAAGTCGCTCAAGCCTGTGCTCGAGAAGCTCGCGGCCGAATATGGCG
GCAAGTTCCTGCTCGCCAAGGTCAACTCCGACGATAACCAGGAACTCGCCGCGCGCTACGGTGTGCGCGGCATCCCAAGC
GTCAAGGCGTTCATCGACGGCCAGCAGGTGGACGAGTTCTCGGGCGCGCTGCCCGAGGGCGAGGTGCGCGCGTTTCTCGA
CCGGCTGATTCCGAGCCCCGCCGAGGCGCTGCGCGAGCAGGCCGCCGATGCCCGCGCCCGAGGCGACTCGGCGGCCGCCC
TCGAGCGCCTGGCCGAGGCGTCCAGACTCGATCCTGCCCACCTCGGCGTGCGTCTCGACGCGGCAGAAAACATGCTCGAC
CTCGGCGAGGCGGATGAAGCGAGCCGCCTGCTCGCCAGCGTGCCGGACGACGCCGATCCGCGTGTGGCGCAGCTGAAGGC
GCGCCTGCGGTTCACCGGCGCGGCGGGCGAGGACGAGAACGCGCTGCGGGCGCGCCTGGCGGCGAACGAGAATGACCACG
GCGCACGGCTCCAGCTCGCCAACCTGCTCGTCGCCGCGGGTCAATACGAAGCGGGCATGGACGCGTTGCTCGAAATCGTG
CGCCGCGACCGCAGTTTCGAGGACGATGTCGGCCGCAAGACGCTGCTTTCGGTGTTCAACCTGCTTGGCCCGGGCGAACT
GGTGAGCCGCTACCGTCGCCTGCTGGCAAGCGCGCTCAATTGA

Upstream 100 bases:

>100_bases
AGAAGGACCGCCTGAAAGCCATGTCACCGGCGTCCTACACGGGCAAGGCGGCGGAGCTGGCGCGGCAGATCTGATTCGCG
ACAATCGAAACGGAGGCCTC

Downstream 100 bases:

>100_bases
GGCGAAGAGGTAGGGCTCGGGCGATGCGCGGCCGGGAGGCCACGAAATCAACAGGGCCTGGGCCTCACCGGCCCTGAATC
CCGACCCCTGACCCCTGACC

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSEHALDVGLADFTQWVLEESKRRPVVVDFWAPWCGPCKSLKPVLEKLAAEYGGKFLLAKVNSDDNQELAARYGVRGIPS
VKAFIDGQQVDEFSGALPEGEVRAFLDRLIPSPAEALREQAADARARGDSAAALERLAEASRLDPAHLGVRLDAAENMLD
LGEADEASRLLASVPDDADPRVAQLKARLRFTGAAGEDENALRARLAANENDHGARLQLANLLVAAGQYEAGMDALLEIV
RRDRSFEDDVGRKTLLSVFNLLGPGELVSRYRRLLASALN

Sequences:

>Translated_280_residues
MSEHALDVGLADFTQWVLEESKRRPVVVDFWAPWCGPCKSLKPVLEKLAAEYGGKFLLAKVNSDDNQELAARYGVRGIPS
VKAFIDGQQVDEFSGALPEGEVRAFLDRLIPSPAEALREQAADARARGDSAAALERLAEASRLDPAHLGVRLDAAENMLD
LGEADEASRLLASVPDDADPRVAQLKARLRFTGAAGEDENALRARLAANENDHGARLQLANLLVAAGQYEAGMDALLEIV
RRDRSFEDDVGRKTLLSVFNLLGPGELVSRYRRLLASALN
>Mature_279_residues
SEHALDVGLADFTQWVLEESKRRPVVVDFWAPWCGPCKSLKPVLEKLAAEYGGKFLLAKVNSDDNQELAARYGVRGIPSV
KAFIDGQQVDEFSGALPEGEVRAFLDRLIPSPAEALREQAADARARGDSAAALERLAEASRLDPAHLGVRLDAAENMLDL
GEADEASRLLASVPDDADPRVAQLKARLRFTGAAGEDENALRARLAANENDHGARLQLANLLVAAGQYEAGMDALLEIVR
RDRSFEDDVGRKTLLSVFNLLGPGELVSRYRRLLASALN

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=86, Percent_Identity=51.1627906976744, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI50592994, Length=87, Percent_Identity=41.3793103448276, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI5031973, Length=74, Percent_Identity=43.2432432432432, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081747, Length=269, Percent_Identity=34.9442379182156, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1788936, Length=83, Percent_Identity=45.7831325301205, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87082331, Length=82, Percent_Identity=47.5609756097561, Blast_Score=94, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI212646193, Length=99, Percent_Identity=42.4242424242424, Blast_Score=88, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17507705, Length=99, Percent_Identity=35.3535353535354, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17509965, Length=80, Percent_Identity=36.25, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71998175, Length=73, Percent_Identity=42.4657534246575, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17556044, Length=77, Percent_Identity=35.0649350649351, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28573567, Length=102, Percent_Identity=40.1960784313725, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24639826, Length=129, Percent_Identity=35.6589147286822, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24664269, Length=124, Percent_Identity=27.4193548387097, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI17648013, Length=79, Percent_Identity=34.1772151898734, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24583090, Length=79, Percent_Identity=34.1772151898734, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI17530795, Length=79, Percent_Identity=34.1772151898734, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21358065, Length=87, Percent_Identity=37.9310344827586, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647799, Length=112, Percent_Identity=37.5, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 30426; Mature: 30294

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEHALDVGLADFTQWVLEESKRRPVVVDFWAPWCGPCKSLKPVLEKLAAEYGGKFLLAK
CCCCHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEE
VNSDDNQELAARYGVRGIPSVKAFIDGQQVDEFSGALPEGEVRAFLDRLIPSPAEALREQ
CCCCCHHHHHHHHCCCCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
AADARARGDSAAALERLAEASRLDPAHLGVRLDAAENMLDLGEADEASRLLASVPDDADP
HHHHHHCCCHHHHHHHHHHHHCCCHHHHCEEECHHHHHHHCCCCHHHHHHHHHCCCCCCH
RVAQLKARLRFTGAAGEDENALRARLAANENDHGARLQLANLLVAAGQYEAGMDALLEIV
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
RRDRSFEDDVGRKTLLSVFNLLGPGELVSRYRRLLASALN
HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEHALDVGLADFTQWVLEESKRRPVVVDFWAPWCGPCKSLKPVLEKLAAEYGGKFLLAK
CCCHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEE
VNSDDNQELAARYGVRGIPSVKAFIDGQQVDEFSGALPEGEVRAFLDRLIPSPAEALREQ
CCCCCHHHHHHHHCCCCCCHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
AADARARGDSAAALERLAEASRLDPAHLGVRLDAAENMLDLGEADEASRLLASVPDDADP
HHHHHHCCCHHHHHHHHHHHHCCCHHHHCEEECHHHHHHHCCCCHHHHHHHHHCCCCCCH
RVAQLKARLRFTGAAGEDENALRARLAANENDHGARLQLANLLVAAGQYEAGMDALLEIV
HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
RRDRSFEDDVGRKTLLSVFNLLGPGELVSRYRRLLASALN
HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]