Definition Thiobacillus denitrificans ATCC 25259 chromosome, complete genome.
Accession NC_007404
Length 2,909,809

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The map label for this gene is yqeZ [H]

Identifier: 74316509

GI number: 74316509

Start: 510065

End: 511405

Strand: Reverse

Name: yqeZ [H]

Synonym: Tbd_0491

Alternate gene names: 74316509

Gene position: 511405-510065 (Counterclockwise)

Preceding gene: 74316510

Following gene: 74316508

Centisome position: 17.58

GC content: 69.28

Gene sequence:

>1341_bases
ATGGCGCATCCCTTCCGAATCCTGCTGGGTCTGGCCCTGCTGTTCGTGCTCGGCGCGCCTGCCGCGGCCGCGACCGTTCG
CGTCCTCACCATACAGGGCGCGATCGGCCCGGCGAGCGCCGATTACCTGCTGCGCGGAATCGACAAGGCGATCAAGGACA
GCGCCCAGCTCGTCGTAATCGAGATGGACACCCCGGGCGGCCTCGACACCTCGATGCGCGACATCATCAAGGCCATCCTC
GCCTCGCCGGTCCCGGTTGCGACCTACGTCTCGCCACGCGGCGCGCGTGCCGCGAGTGCCGGCACCTACATCCTCTACGC
GAGCCACATCGCCGCGATGGCGCCGGCGACGAATCTCGGCGCGGCGACCCCGGTCGAACTCGCTCCTGGCGGCAGCGACA
AGCCCGCGCAGCCGGCCGGCGACCAAGCCCGCGAGCCGCCCGGTGACCCGAAAATGCGCAAGGCCGTGCACGACGCCGCC
GCCTATATCCGCGGCCTCGCCGAGCTGCGCGGACGCAATGCCGAGTGGGCCGAACGCGCGGTGCGCGAGGCCGTGAGCCT
GTCGGCGCCCGAAGCGCTCGAACTCAAGGTCGTCGATCTGATCGCGGCCAGCATCGAGGATCTGTTGCGCCAGATCGACG
GCCGCGTCGTCAGAACCGCGACCGGCGAGGTGACGCTCGCGACGGCCGACGCGCAGGTCGAGCCGGTGGTGCCGGACTGG
CGCAGCCGCCTGCTTGCCGTGATTGGCGATCCGAGCATCGCCTACATCCTGATGCTGCTCGGCATCTACGGTCTGATCTA
CGAGTTCTCCAACCCCGGCATGTTCTTCCCGGGCGTGGTCGGCGGCATCTGCCTGCTGCTCGCGCTGTTCGCGCTGCAGG
TCATGCCGATCAGCTACGCCGGACTCGCGCTGATGGTGCTCGGCATCGTGCTGATGATCTCCGAGGCCTTCATCCCGAGC
TTCGGCGCGCTCGGCCTCGGCGGCATCGTCGCCTTCACGATCGGCTCGGTCATGCTGATCGACACCGAGGCGCCGGGCTA
CGGCATTCCGTGGATGCTCGTCGTGCCGGTGGCGTTGGCGAGCGCGCTGTTCAGCTTCTTCGCCGTCGGCATGGCGCTGA
AGGCCCGCAGCCGCCCCGTCGTGACCGGCGCCGAGGAAATGCTCGGCGCGCGCGGAGAGGTCATCGACGACATGGCCGGC
GAAGGCTGGGCCCGCATACACGGCGAACAATGGCGGGTGCGCAGCGGCACGCCGCTGAAACGGGGCGATCGCGTGCGCGT
GCGCGCCCGCCACGACCTGATCCTCGAAGTGGAACCGGACAAGGAGAACGACCATGTTTGA

Upstream 100 bases:

>100_bases
GCTCGCTCCGCCGCCGGACCCTGAGCGCCCGCCCCGCGACCCGGAGTAAGCCCCGGCCGCCCGATTGGACCGCGGGGATT
CGGGCGTCTAGATTGAGGGG

Downstream 100 bases:

>100_bases
ATTTGGCGGCTTGACTGTCGTGTTCGCGCTCATCGCGCTTCTGGTCGCGAGCGTGCGCATCCTGCGCGAGTACGAACGCG
GCGTCGTGTTCATGCTCGGC

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MAHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVIEMDTPGGLDTSMRDIIKAIL
ASPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLGAATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAA
AYIRGLAELRGRNAEWAERAVREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDW
RSRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYAGLALMVLGIVLMISEAFIPS
FGALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALASALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAG
EGWARIHGEQWRVRSGTPLKRGDRVRVRARHDLILEVEPDKENDHV

Sequences:

>Translated_446_residues
MAHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVIEMDTPGGLDTSMRDIIKAIL
ASPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLGAATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAA
AYIRGLAELRGRNAEWAERAVREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDW
RSRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYAGLALMVLGIVLMISEAFIPS
FGALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALASALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAG
EGWARIHGEQWRVRSGTPLKRGDRVRVRARHDLILEVEPDKENDHV
>Mature_445_residues
AHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVIEMDTPGGLDTSMRDIIKAILA
SPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLGAATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAAA
YIRGLAELRGRNAEWAERAVREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDWR
SRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYAGLALMVLGIVLMISEAFIPSF
GALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALASALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAGE
GWARIHGEQWRVRSGTPLKRGDRVRVRARHDLILEVEPDKENDHV

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002810
- InterPro:   IPR002825 [H]

Pfam domain/function: PF01972 DUF114; PF01957 NfeD [H]

EC number: NA

Molecular weight: Translated: 47032; Mature: 46900

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVI
CCCHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
EMDTPGGLDTSMRDIIKAILASPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLG
EECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHCCCCCCC
AATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAAAYIRGLAELRGRNAEWAERA
CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDW
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCHHH
RSRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYA
HHHEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCHH
GLALMVLGIVLMISEAFIPSFGALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHH
SALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAGEGWARIHGEQWRVRSGTPLK
HHHHHHHHHHHHHHCCCCCCEECHHHHHCCCCCHHHHHCCCCEEEECCCCEEECCCCCCC
RGDRVRVRARHDLILEVEPDKENDHV
CCCEEEEEEECCEEEEECCCCCCCCC
>Mature Secondary Structure 
AHPFRILLGLALLFVLGAPAAAATVRVLTIQGAIGPASADYLLRGIDKAIKDSAQLVVI
CCHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEE
EMDTPGGLDTSMRDIIKAILASPVPVATYVSPRGARAASAGTYILYASHIAAMAPATNLG
EECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHCCCCCCC
AATPVELAPGGSDKPAQPAGDQAREPPGDPKMRKAVHDAAAYIRGLAELRGRNAEWAERA
CCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VREAVSLSAPEALELKVVDLIAASIEDLLRQIDGRVVRTATGEVTLATADAQVEPVVPDW
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCCCCHHH
RSRLLAVIGDPSIAYILMLLGIYGLIYEFSNPGMFFPGVVGGICLLLALFALQVMPISYA
HHHEEHHCCCCHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHCCCHH
GLALMVLGIVLMISEAFIPSFGALGLGGIVAFTIGSVMLIDTEAPGYGIPWMLVVPVALA
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHH
SALFSFFAVGMALKARSRPVVTGAEEMLGARGEVIDDMAGEGWARIHGEQWRVRSGTPLK
HHHHHHHHHHHHHHCCCCCCEECHHHHHCCCCCHHHHHCCCCEEEECCCCEEECCCCCCC
RGDRVRVRARHDLILEVEPDKENDHV
CCCEEEEEEECCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]