| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is ppdK [H]
Identifier: 74316386
GI number: 74316386
Start: 398164
End: 398883
Strand: Direct
Name: ppdK [H]
Synonym: Tbd_0368
Alternate gene names: 74316386
Gene position: 398164-398883 (Clockwise)
Preceding gene: 74316385
Following gene: 74316387
Centisome position: 13.68
GC content: 63.89
Gene sequence:
>720_bases ATGCCTAAAGGAAAAAGCAAGTCCGCCGCACGGCTGCCCGTGTTCGACCTGAACGGTCGAGACGGCGTGCCGGACGTGCG CATCGTCGGCTTCAAGGCACACAACCTGATCCGCATGGCCGCGATGGGTTTGCCGGTGCCGCAGGGCTTCGTCATGGGCA CTGACTGGTGCGGGGCCATCCGGAACGGCGAGGGTGTGAAGGTGCATTTGCCCGATGCGCTGCAATCCGGCATCCGCGAC CTGGAACGAGCCACCGGCCTTGGGTTCGGCAGCGCGCGCCGCCCTCTGCTGGTTTCGGTGCGCTCGGGCGCACCGGTTTC CATGCCGGGCATGATGGAAACGGTGCTTAATGTCGGACTGAATGATGTGTCGCTGGCAGGGCTGTTGCGGCTGACCGGCG ATCACCGTCTGGTGTGGGATTCCTATCGCCGCCTGATCCAGGCCTTTGCCGAGATCGTAGCCGTTATCCCGGCCGAGCCG TTCGAGGCTGCGCTGGATGCCACCCTGCGCCGGGCCGGCGCAGACGTTGCGCGCCAGCTCGACTTCCAGGCCCTGCGCGA CCTGGCGCACATCTACCTCGACCTCTACCACGGCCACACCGGCCGGGAATTCCCCCAGGATCCATTCGAGCAGCTGTGGA TGGCGTGCAGGCGATTGAAAGCTCTGCTGGGAAAAGTGATTTCGAACTGCATCAAGTTCTGGAAGGCGCTCGAAACATAA
Upstream 100 bases:
>100_bases TTCGGCATCGTCGAGGCAGCGCGCAATCTCGAGGAGGCAGCCGACGGCCTCATGCACGTGGCCCTGCTGCTGCGCGATCA TGTGATGGGCAAGGTGATTC
Downstream 100 bases:
>100_bases TCAACGGCAACGCCATATTTCTACACGACATCTATCAAAGCAAGGTATGGAATGAGGTCTATGGATCGAAAGCCTAACCC GGCGGTCAAGGCGCTCCCTC
Product: pyruvate,orthophosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 239; Mature: 238
Protein sequence:
>239_residues MPKGKSKSAARLPVFDLNGRDGVPDVRIVGFKAHNLIRMAAMGLPVPQGFVMGTDWCGAIRNGEGVKVHLPDALQSGIRD LERATGLGFGSARRPLLVSVRSGAPVSMPGMMETVLNVGLNDVSLAGLLRLTGDHRLVWDSYRRLIQAFAEIVAVIPAEP FEAALDATLRRAGADVARQLDFQALRDLAHIYLDLYHGHTGREFPQDPFEQLWMACRRLKALLGKVISNCIKFWKALET
Sequences:
>Translated_239_residues MPKGKSKSAARLPVFDLNGRDGVPDVRIVGFKAHNLIRMAAMGLPVPQGFVMGTDWCGAIRNGEGVKVHLPDALQSGIRD LERATGLGFGSARRPLLVSVRSGAPVSMPGMMETVLNVGLNDVSLAGLLRLTGDHRLVWDSYRRLIQAFAEIVAVIPAEP FEAALDATLRRAGADVARQLDFQALRDLAHIYLDLYHGHTGREFPQDPFEQLWMACRRLKALLGKVISNCIKFWKALET >Mature_238_residues PKGKSKSAARLPVFDLNGRDGVPDVRIVGFKAHNLIRMAAMGLPVPQGFVMGTDWCGAIRNGEGVKVHLPDALQSGIRDL ERATGLGFGSARRPLLVSVRSGAPVSMPGMMETVLNVGLNDVSLAGLLRLTGDHRLVWDSYRRLIQAFAEIVAVIPAEPF EAALDATLRRAGADVARQLDFQALRDLAHIYLDLYHGHTGREFPQDPFEQLWMACRRLKALLGKVISNCIKFWKALET
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate. In E.histolytica and C.symbiosus, PPDK functions in the direction of ATP synthesis [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 26221; Mature: 26090
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKGKSKSAARLPVFDLNGRDGVPDVRIVGFKAHNLIRMAAMGLPVPQGFVMGTDWCGAI CCCCCCCCCCCCCEEECCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCEEECCCHHHHC RNGEGVKVHLPDALQSGIRDLERATGLGFGSARRPLLVSVRSGAPVSMPGMMETVLNVGL CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCC NDVSLAGLLRLTGDHRLVWDSYRRLIQAFAEIVAVIPAEPFEAALDATLRRAGADVARQL CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH DFQALRDLAHIYLDLYHGHTGREFPQDPFEQLWMACRRLKALLGKVISNCIKFWKALET HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PKGKSKSAARLPVFDLNGRDGVPDVRIVGFKAHNLIRMAAMGLPVPQGFVMGTDWCGAI CCCCCCCCCCCCEEECCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCCEEECCCHHHHC RNGEGVKVHLPDALQSGIRDLERATGLGFGSARRPLLVSVRSGAPVSMPGMMETVLNVGL CCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCC NDVSLAGLLRLTGDHRLVWDSYRRLIQAFAEIVAVIPAEPFEAALDATLRRAGADVARQL CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH DFQALRDLAHIYLDLYHGHTGREFPQDPFEQLWMACRRLKALLGKVISNCIKFWKALET HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2176881; 6257292; 11695893; 11468288; 8610096; 9753432 [H]