| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74316067
Identifier: 74316067
GI number: 74316067
Start: 50491
End: 52728
Strand: Reverse
Name: 74316067
Synonym: Tbd_0049
Alternate gene names: NA
Gene position: 52728-50491 (Counterclockwise)
Preceding gene: 74316071
Following gene: 74316066
Centisome position: 1.81
GC content: 68.05
Gene sequence:
>2238_bases ATGAAAGGAGCCGCCGTGAGCGCCCAGTTCCAGCCGACCCCCGAATCCTTCCCGCCCTTCTGCGAGGGGATCCAGTATTT CGCCGACAGCTTCCCCGAATTCGACCGCCTCGGAGCCGCGCCGCTGCTCGGCTCCGGCCAGCCCGCGTTGCCCGACGCAA CAAGCGAGGCCGCGATCTACCAGACGCTGCTCGCCGCCGACGCGCTGCGCTACCTGACGCTGCAGGTCACCGGCAGCAAG TCGTCGGGCCACCCCGGCGGCTTCGCGTCCTCCGCCGACGCCGTCGCCGCGCTGCATCTGCTCGGCCACCGCAACATGGT GACCGAGGTCGGCCACCACGCACCCGGCTTCTATTCGGCAATGTTCCTCGACACCTCGCTCGAGGCGATGGGGATCACGA CCGTTGCCGAGATGCGTGCGCGCTTCCGCGAGCGTCACGGCCTGCTCGGTCACCTCTCGGGCGCGATTCCGGGTCTGTTG GCCCCCGCAGGCCCCTTGGGCCAGGGCCAGCATTTCGCGCTCGCCGGCGCCTACCTGTATCGCGACACGCTCTTCCCGGT GACGATCGGCGACGGCGGCCTCGGCGAGCCCTACATCATGAGCGCGTTCCAGCATTTCGCGACCGCCTACCCCGATGTGA CCAATTACCTGCCGGTGCTGGTGTGGAATGGCTACTCGCAGGAGCACCACAGCATGGTGTCACTGTGGGACAACGAACAG ATGATCGCGTACTGGCGCGCGCATGGGTTTGATGAAGTGCACCTGATCGACGCGCGCGACTACGGCGGCGCGAACGCGCC GGTCTACGCCGACAGCACGACGTTCGACTTCAAGCAGCGCATGGCCTTCACCGGCGCCGTGCTTGCGGCCGCCGACGCGG CCGCGAAATCCGCGCTCTCGGGCCGCCGTGCCTGCCTCATCGTCAAGCAGCTGAAGGGCGCGGGCGTGCATGCGACCGGC GCCAAGTCGCACAACCTCTATGCGCACCACACGCTCGACTCCGACGACGTCAAAGGCGGCCTGCAACGCCGCGCGCTGCC GATCAAGGCATGGGAACTCGTGCGCGAGAACTTCCGCCACGCCGGCGGCGGCCCGGCCGCCAAGGTCGCGGTGACCGAAA ACGTTCGCGCACTGCCGAGTCTCGATGGGCTTGCGCTAACCGAATTCGCGGTGGGCGAGAGCCACATCCCCACCACCGCG TTCGGCCTCGTGGTCGGCGAAGTCGGCAAGCGCGACCCGCACTTCGTCGTCACCAACGCCGACGGCAACGAGGCGTCTGG CATGGCCAACATCAACAAGGCGCTGACGATCCGCCATCCGACCGCCGACGACCTCTACTTCCAGGGCCCGTCGGGCCAGG TCTACGAGCCGCTCAACGAAGACGCTTGCGCGGGGCTTGCCGTCGGCGTTGCGCTCTTCGGCGGACGCAGCCTGTGGTGC AGCTACGAGTCGTTCGCGATCAACGGCCTGCCGATCTGGCAGACGGTGACGCAGGCGATGGCCGAGCTGCGGCGCCCGAC GCCGGCGACGGTGTGCCTGTTCACCGCCGGTGCGCTCGAGCAGGGCCGCAACGGCTGGACCCACCAGCGCCCCGAGATCG AGAACTACTTCGCGGCGATGATGCGCAACGGCAACGTCTATCCGCTCTTCCCGGTCGACGCCAACATGATCCAGGCGAGC TACGACTGGGCCTTGAAGCAGACCAACAAAGGCGTCGTGATCACCGCGTCGAAGTCGCCGCTGACTATTCACACGACGCT CGCGCAAAGCCGTCAGGCGATCGACGACGGCGCAATCGTATTGAAGGAACACAAGGGGTCGCACACGGTCGTGTTCGCGG TCGCCGGCGACCTCGTACTGCAGCCCGTGCTCGCCGCGGCCGAGAAGCTCGCCGAAACCGGTATCGGCTCGCGCATCGTC GCCGTGGTCAATCCGCGCCGGCTGTATCGTCCGACCGACGTACTGTGGGACAGCGTCTCCGAGCCCGACGGGCGCTTCAT GGACGACGAGGCCTTCCGTGCCCTGTTCGACGGCGACGTACTGATCGGCGTGAGCGGCGGTCCCTCGGCGCCGCTCGAGC CGGTGTTGCTGCGCAGCCGCGCCGGCGAGCGTGAAGTGTTCTGCTGGAAGCGCGGCGAGACCACCGCCAACCCGCAGCAG CTGTTCGACTTCAACGGCATGAACGCGCAGGCGATGGGCGAGCGCGCGATGGCCCTGCTCGAGCGCGCCGCGGGCTGA
Upstream 100 bases:
>100_bases TTTTTCATAAGGCGAAAATTTCCTGCGCGATGTGAAACGGTTTGCATTTTACTGCTTCAATACGTCAACCGTTTCACATG ACGTGAAACATTTTCGTATC
Downstream 100 bases:
>100_bases TGCCGGTGTCGGGAGGTCCGTCCATGAAACCGAAAATCATCGTGCTCGACGACGACCCGACCGGCTCGCAGACCGTGCAT TCGTGTCTGCTGCTGACGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 745; Mature: 745
Protein sequence:
>745_residues MKGAAVSAQFQPTPESFPPFCEGIQYFADSFPEFDRLGAAPLLGSGQPALPDATSEAAIYQTLLAADALRYLTLQVTGSK SSGHPGGFASSADAVAALHLLGHRNMVTEVGHHAPGFYSAMFLDTSLEAMGITTVAEMRARFRERHGLLGHLSGAIPGLL APAGPLGQGQHFALAGAYLYRDTLFPVTIGDGGLGEPYIMSAFQHFATAYPDVTNYLPVLVWNGYSQEHHSMVSLWDNEQ MIAYWRAHGFDEVHLIDARDYGGANAPVYADSTTFDFKQRMAFTGAVLAAADAAAKSALSGRRACLIVKQLKGAGVHATG AKSHNLYAHHTLDSDDVKGGLQRRALPIKAWELVRENFRHAGGGPAAKVAVTENVRALPSLDGLALTEFAVGESHIPTTA FGLVVGEVGKRDPHFVVTNADGNEASGMANINKALTIRHPTADDLYFQGPSGQVYEPLNEDACAGLAVGVALFGGRSLWC SYESFAINGLPIWQTVTQAMAELRRPTPATVCLFTAGALEQGRNGWTHQRPEIENYFAAMMRNGNVYPLFPVDANMIQAS YDWALKQTNKGVVITASKSPLTIHTTLAQSRQAIDDGAIVLKEHKGSHTVVFAVAGDLVLQPVLAAAEKLAETGIGSRIV AVVNPRRLYRPTDVLWDSVSEPDGRFMDDEAFRALFDGDVLIGVSGGPSAPLEPVLLRSRAGEREVFCWKRGETTANPQQ LFDFNGMNAQAMGERAMALLERAAG
Sequences:
>Translated_745_residues MKGAAVSAQFQPTPESFPPFCEGIQYFADSFPEFDRLGAAPLLGSGQPALPDATSEAAIYQTLLAADALRYLTLQVTGSK SSGHPGGFASSADAVAALHLLGHRNMVTEVGHHAPGFYSAMFLDTSLEAMGITTVAEMRARFRERHGLLGHLSGAIPGLL APAGPLGQGQHFALAGAYLYRDTLFPVTIGDGGLGEPYIMSAFQHFATAYPDVTNYLPVLVWNGYSQEHHSMVSLWDNEQ MIAYWRAHGFDEVHLIDARDYGGANAPVYADSTTFDFKQRMAFTGAVLAAADAAAKSALSGRRACLIVKQLKGAGVHATG AKSHNLYAHHTLDSDDVKGGLQRRALPIKAWELVRENFRHAGGGPAAKVAVTENVRALPSLDGLALTEFAVGESHIPTTA FGLVVGEVGKRDPHFVVTNADGNEASGMANINKALTIRHPTADDLYFQGPSGQVYEPLNEDACAGLAVGVALFGGRSLWC SYESFAINGLPIWQTVTQAMAELRRPTPATVCLFTAGALEQGRNGWTHQRPEIENYFAAMMRNGNVYPLFPVDANMIQAS YDWALKQTNKGVVITASKSPLTIHTTLAQSRQAIDDGAIVLKEHKGSHTVVFAVAGDLVLQPVLAAAEKLAETGIGSRIV AVVNPRRLYRPTDVLWDSVSEPDGRFMDDEAFRALFDGDVLIGVSGGPSAPLEPVLLRSRAGEREVFCWKRGETTANPQQ LFDFNGMNAQAMGERAMALLERAAG >Mature_745_residues MKGAAVSAQFQPTPESFPPFCEGIQYFADSFPEFDRLGAAPLLGSGQPALPDATSEAAIYQTLLAADALRYLTLQVTGSK SSGHPGGFASSADAVAALHLLGHRNMVTEVGHHAPGFYSAMFLDTSLEAMGITTVAEMRARFRERHGLLGHLSGAIPGLL APAGPLGQGQHFALAGAYLYRDTLFPVTIGDGGLGEPYIMSAFQHFATAYPDVTNYLPVLVWNGYSQEHHSMVSLWDNEQ MIAYWRAHGFDEVHLIDARDYGGANAPVYADSTTFDFKQRMAFTGAVLAAADAAAKSALSGRRACLIVKQLKGAGVHATG AKSHNLYAHHTLDSDDVKGGLQRRALPIKAWELVRENFRHAGGGPAAKVAVTENVRALPSLDGLALTEFAVGESHIPTTA FGLVVGEVGKRDPHFVVTNADGNEASGMANINKALTIRHPTADDLYFQGPSGQVYEPLNEDACAGLAVGVALFGGRSLWC SYESFAINGLPIWQTVTQAMAELRRPTPATVCLFTAGALEQGRNGWTHQRPEIENYFAAMMRNGNVYPLFPVDANMIQAS YDWALKQTNKGVVITASKSPLTIHTTLAQSRQAIDDGAIVLKEHKGSHTVVFAVAGDLVLQPVLAAAEKLAETGIGSRIV AVVNPRRLYRPTDVLWDSVSEPDGRFMDDEAFRALFDGDVLIGVSGGPSAPLEPVLLRSRAGEREVFCWKRGETTANPQQ LFDFNGMNAQAMGERAMALLERAAG
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 79844; Mature: 79844
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGAAVSAQFQPTPESFPPFCEGIQYFADSFPEFDRLGAAPLLGSGQPALPDATSEAAIY CCCCEECEECCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHH QTLLAADALRYLTLQVTGSKSSGHPGGFASSADAVAALHLLGHRNMVTEVGHHAPGFYSA HHHHHHHHEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEE MFLDTSLEAMGITTVAEMRARFRERHGLLGHLSGAIPGLLAPAGPLGQGQHFALAGAYLY EEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCEEEEEEHEEH RDTLFPVTIGDGGLGEPYIMSAFQHFATAYPDVTNYLPVLVWNGYSQEHHSMVSLWDNEQ HCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHCCCEEEEECCCCHHHCCEEEECCCCC MIAYWRAHGFDEVHLIDARDYGGANAPVYADSTTFDFKQRMAFTGAVLAAADAAAKSALS EEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC GRRACLIVKQLKGAGVHATGAKSHNLYAHHTLDSDDVKGGLQRRALPIKAWELVRENFRH CCCEEEEEEHHCCCCEEECCCCCCCEEEEECCCCHHHHCCHHHCCCCHHHHHHHHHHHHC AGGGPAAKVAVTENVRALPSLDGLALTEFAVGESHIPTTAFGLVVGEVGKRDPHFVVTNA CCCCCEEEEEEECCCHHCCCCCCCEEEHEECCCCCCCHHHHHHHHHHCCCCCCCEEEECC DGNEASGMANINKALTIRHPTADDLYFQGPSGQVYEPLNEDACAGLAVGVALFGGRSLWC CCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE SYESFAINGLPIWQTVTQAMAELRRPTPATVCLFTAGALEQGRNGWTHQRPEIENYFAAM ECCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCCCCCCHHHHHHHH MRNGNVYPLFPVDANMIQASYDWALKQTNKGVVITASKSPLTIHTTLAQSRQAIDDGAIV HHCCCEEEEECCCCCEEEECCCHHEEECCCCEEEEECCCCEEEEEHHHHHHHHCCCCEEE LKEHKGSHTVVFAVAGDLVLQPVLAAAEKLAETGIGSRIVAVVNPRRLYRPTDVLWDSVS EEECCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCHHHHHCCCC EPDGRFMDDEAFRALFDGDVLIGVSGGPSAPLEPVLLRSRAGEREVFCWKRGETTANPQQ CCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHH LFDFNGMNAQAMGERAMALLERAAG HHCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKGAAVSAQFQPTPESFPPFCEGIQYFADSFPEFDRLGAAPLLGSGQPALPDATSEAAIY CCCCEECEECCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHH QTLLAADALRYLTLQVTGSKSSGHPGGFASSADAVAALHLLGHRNMVTEVGHHAPGFYSA HHHHHHHHEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCEEE MFLDTSLEAMGITTVAEMRARFRERHGLLGHLSGAIPGLLAPAGPLGQGQHFALAGAYLY EEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHCCCCCCCCCCEEEEEEHEEH RDTLFPVTIGDGGLGEPYIMSAFQHFATAYPDVTNYLPVLVWNGYSQEHHSMVSLWDNEQ HCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCHHCCCEEEEECCCCHHHCCEEEECCCCC MIAYWRAHGFDEVHLIDARDYGGANAPVYADSTTFDFKQRMAFTGAVLAAADAAAKSALS EEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHC GRRACLIVKQLKGAGVHATGAKSHNLYAHHTLDSDDVKGGLQRRALPIKAWELVRENFRH CCCEEEEEEHHCCCCEEECCCCCCCEEEEECCCCHHHHCCHHHCCCCHHHHHHHHHHHHC AGGGPAAKVAVTENVRALPSLDGLALTEFAVGESHIPTTAFGLVVGEVGKRDPHFVVTNA CCCCCEEEEEEECCCHHCCCCCCCEEEHEECCCCCCCHHHHHHHHHHCCCCCCCEEEECC DGNEASGMANINKALTIRHPTADDLYFQGPSGQVYEPLNEDACAGLAVGVALFGGRSLWC CCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE SYESFAINGLPIWQTVTQAMAELRRPTPATVCLFTAGALEQGRNGWTHQRPEIENYFAAM ECCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCCCCCCCCCHHHHHHHH MRNGNVYPLFPVDANMIQASYDWALKQTNKGVVITASKSPLTIHTTLAQSRQAIDDGAIV HHCCCEEEEECCCCCEEEECCCHHEEECCCCEEEEECCCCEEEEEHHHHHHHHCCCCEEE LKEHKGSHTVVFAVAGDLVLQPVLAAAEKLAETGIGSRIVAVVNPRRLYRPTDVLWDSVS EEECCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCHHHHHCCCC EPDGRFMDDEAFRALFDGDVLIGVSGGPSAPLEPVLLRSRAGEREVFCWKRGETTANPQQ CCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHH LFDFNGMNAQAMGERAMALLERAAG HHCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA