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The map label for this gene is rlpA [C]

Identifier: 73542950

GI number: 73542950

Start: 3576948

End: 3577691

Strand: Reverse

Name: rlpA [C]

Synonym: Reut_A3267

Alternate gene names: 73542950

Gene position: 3577691-3576948 (Counterclockwise)

Preceding gene: 73542954

Following gene: 73542948

Centisome position: 93.99

GC content: 67.74

Gene sequence:

>744_bases
ATGAACTGGATTCTGCCGATCTTCTCCGGCTGGCAGCGGCTGGCAAAACTGGGCACATGCACGGCATGTGCCGCGGTTCT
GGCCGCCTGTGCGACGCCGCCCGAGGGCGGCAGCTCCGCCGATGCCGGGACCTCTGGCGCGGTGCCGACCAAGGCTGCCC
GCGCGCCCAAAATTGCCAAGGCCGACAAGCCCGATACCGGTAGCTGGAACCTGTTTGGCCTCGATCAGGACGACAGCAGC
CTGAGCGGCCGTTCGCTGGACGGCCTGCGCGCCGACATGGGCTCGTTCGAGCAACGCGGCATGGCTTCCTGGTACGGCAA
GGGCTTCCATGGCCGCAAGACCGCCAACGGTGAACGCTTCGACATGCGCGCGATGACCGCGGCGCATCCGTCGCTGCCGC
TCGATAGCTGGGTGCTCGTGCGCAACCTGCGCAACAACAAGGTCGCCGTACTGCGCATCAACGACCGCGGCCCGTACCAC
GGCAACCGCGTGCTCGACGTGTCCTATGGTGCCGCGCGCCGCCTTGGCTTTGTCGACCACGGCGCCACGCAGGTTGAAAT
CCGGCGGCTGTCGCGCACGGAAGTCGCCGCGCTGGGCCCTCAGTTTGACGCAGGTGGCAACGAAGCCGGCGATGGTGCTG
GCGATGACGACGTTGCTGTGCCGGAACTGGCCAACTCGCTGGCGCCGACCAAGGGCAGGTCGTCCGCGAAGGCCAGGTCG
ACGGCCAAGCGCAAGCGCCACTGA

Upstream 100 bases:

>100_bases
GGGGATTGCGGCGAATTGAGGGGCCATTCGTGCGAGATCGCACATAATTCGTAACAAAATCAATGCTATAGACGGAACTG
TACGATGATAGACTCGCGCG

Downstream 100 bases:

>100_bases
TTCGGCGCGGGCCGACGCATGCCGCCACGCGCCCCGGCCCGTCCCCCCGCCTTCCTCTTTCTCCGCTTCCCTTCAGTCCC
CGCCGCGCTGCGCCAGCGCC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MNWILPIFSGWQRLAKLGTCTACAAVLAACATPPEGGSSADAGTSGAVPTKAARAPKIAKADKPDTGSWNLFGLDQDDSS
LSGRSLDGLRADMGSFEQRGMASWYGKGFHGRKTANGERFDMRAMTAAHPSLPLDSWVLVRNLRNNKVAVLRINDRGPYH
GNRVLDVSYGAARRLGFVDHGATQVEIRRLSRTEVAALGPQFDAGGNEAGDGAGDDDVAVPELANSLAPTKGRSSAKARS
TAKRKRH

Sequences:

>Translated_247_residues
MNWILPIFSGWQRLAKLGTCTACAAVLAACATPPEGGSSADAGTSGAVPTKAARAPKIAKADKPDTGSWNLFGLDQDDSS
LSGRSLDGLRADMGSFEQRGMASWYGKGFHGRKTANGERFDMRAMTAAHPSLPLDSWVLVRNLRNNKVAVLRINDRGPYH
GNRVLDVSYGAARRLGFVDHGATQVEIRRLSRTEVAALGPQFDAGGNEAGDGAGDDDVAVPELANSLAPTKGRSSAKARS
TAKRKRH
>Mature_247_residues
MNWILPIFSGWQRLAKLGTCTACAAVLAACATPPEGGSSADAGTSGAVPTKAARAPKIAKADKPDTGSWNLFGLDQDDSS
LSGRSLDGLRADMGSFEQRGMASWYGKGFHGRKTANGERFDMRAMTAAHPSLPLDSWVLVRNLRNNKVAVLRINDRGPYH
GNRVLDVSYGAARRLGFVDHGATQVEIRRLSRTEVAALGPQFDAGGNEAGDGAGDDDVAVPELANSLAPTKGRSSAKARS
TAKRKRH

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=173, Percent_Identity=35.8381502890173, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 26159; Mature: 26159

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: PS00138 SUBTILASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWILPIFSGWQRLAKLGTCTACAAVLAACATPPEGGSSADAGTSGAVPTKAARAPKIAK
CCEECHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
ADKPDTGSWNLFGLDQDDSSLSGRSLDGLRADMGSFEQRGMASWYGKGFHGRKTANGERF
CCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCE
DMRAMTAAHPSLPLDSWVLVRNLRNNKVAVLRINDRGPYHGNRVLDVSYGAARRLGFVDH
EHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHCCCCCC
GATQVEIRRLSRTEVAALGPQFDAGGNEAGDGAGDDDVAVPELANSLAPTKGRSSAKARS
CCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHH
TAKRKRH
HHHHCCC
>Mature Secondary Structure
MNWILPIFSGWQRLAKLGTCTACAAVLAACATPPEGGSSADAGTSGAVPTKAARAPKIAK
CCEECHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
ADKPDTGSWNLFGLDQDDSSLSGRSLDGLRADMGSFEQRGMASWYGKGFHGRKTANGERF
CCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCE
DMRAMTAAHPSLPLDSWVLVRNLRNNKVAVLRINDRGPYHGNRVLDVSYGAARRLGFVDH
EHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHCCCCCC
GATQVEIRRLSRTEVAALGPQFDAGGNEAGDGAGDDDVAVPELANSLAPTKGRSSAKARS
CCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHH
TAKRKRH
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]