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The map label for this gene is opuBB [H]

Identifier: 73542181

GI number: 73542181

Start: 2735600

End: 2736316

Strand: Reverse

Name: opuBB [H]

Synonym: Reut_A2496

Alternate gene names: 73542181

Gene position: 2736316-2735600 (Counterclockwise)

Preceding gene: 73542188

Following gene: 73542180

Centisome position: 71.88

GC content: 69.32

Gene sequence:

>717_bases
ATGTCAAAGCAATCCGTGCGGGTCGCCGCCTGGGGATGCCTGACCGTGCTGGCATTGGGCGGACTGGCCGCCTGGATCGG
CGTGGACGTCATCCGTCAACATCAGGACCGCCTGCTCTACGACGTGGCCGACCACATGCGGCTGGTCGTGTTTTCGATGG
CGCTTGCGCTCGCCACCGGCATTCCGGCCGGCATCGCGCTGAGCCGGCCGCGCATGCGCCGCTGGGCCGACCGCCTGATG
CAGATCTTCAACGTCGGCAACACGGTGCCGTCGCTGGCGGTACTCGCGCTGGCGCTCGCGGTGCTGGGCATCGGCGAGCG
GCCCGCGATCCTGGCGCTGTGGCTCGCATCGCTGCTGCCGATCGTGCGCAACACCTACGAGGGTCTTCGCAATGTTTCGC
CGACGCTGCTCGAAGCCGCGCGCGGCATCGGCATGACGCCGTTCCAGCGGCTTCTGCGCGTGGAGCTGCCGAACGCGCTG
CCGGTGATGCTGGCCGGCATCCGCATCAGCCTGGTGATCAACGTAGGCACGGTGCCGCTGTCGTTCCTGATCGGCGCCAA
CAGCCTCGGCGAACTGATCTTCCCGGGCATCTACCTGAATAACCAGCCGCTGCTGCTGCTGGGCGCCGCCGCGACCGCGC
TGCTGGCGCTGGCGCTCGACGCGCTGTTTGCCGGCGCCGGCAGCCTGTACCTGCGCCGGCGCGGACTGGCGCGCTGA

Upstream 100 bases:

>100_bases
CGGGACGGCGGCTCCCCACTTCACGGCCGCCTAGCCCATTTTGTTTTCCGTGATCGGAAAGTGCTGTTTTGCGCGCTTTT
CAGACGGAGCGAGAGGCAAT

Downstream 100 bases:

>100_bases
GCGGCGGCCGAGAGGAAAACCAATGCAATCGAAACGAGACCGCGAAGGCCGTGCCTTCTGGGCCTTCATGCTCTTGGGCA
CCATCGTGGCCGCCGTGCTG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MSKQSVRVAAWGCLTVLALGGLAAWIGVDVIRQHQDRLLYDVADHMRLVVFSMALALATGIPAGIALSRPRMRRWADRLM
QIFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLPIVRNTYEGLRNVSPTLLEAARGIGMTPFQRLLRVELPNAL
PVMLAGIRISLVINVGTVPLSFLIGANSLGELIFPGIYLNNQPLLLLGAAATALLALALDALFAGAGSLYLRRRGLAR

Sequences:

>Translated_238_residues
MSKQSVRVAAWGCLTVLALGGLAAWIGVDVIRQHQDRLLYDVADHMRLVVFSMALALATGIPAGIALSRPRMRRWADRLM
QIFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLPIVRNTYEGLRNVSPTLLEAARGIGMTPFQRLLRVELPNAL
PVMLAGIRISLVINVGTVPLSFLIGANSLGELIFPGIYLNNQPLLLLGAAATALLALALDALFAGAGSLYLRRRGLAR
>Mature_237_residues
SKQSVRVAAWGCLTVLALGGLAAWIGVDVIRQHQDRLLYDVADHMRLVVFSMALALATGIPAGIALSRPRMRRWADRLMQ
IFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLPIVRNTYEGLRNVSPTLLEAARGIGMTPFQRLLRVELPNALP
VMLAGIRISLVINVGTVPLSFLIGANSLGELIFPGIYLNNQPLLLLGAAATALLALALDALFAGAGSLYLRRRGLAR

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=179, Percent_Identity=41.340782122905, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788451, Length=207, Percent_Identity=36.231884057971, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789033, Length=184, Percent_Identity=30.4347826086957, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87081802, Length=116, Percent_Identity=35.3448275862069, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786564, Length=151, Percent_Identity=32.4503311258278, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25425; Mature: 25294

Theoretical pI: Translated: 11.78; Mature: 11.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQSVRVAAWGCLTVLALGGLAAWIGVDVIRQHQDRLLYDVADHMRLVVFSMALALATG
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPAGIALSRPRMRRWADRLMQIFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLP
CCCCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IVRNTYEGLRNVSPTLLEAARGIGMTPFQRLLRVELPNALPVMLAGIRISLVINVGTVPL
HHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHEEEEEEEECCHHH
SFLIGANSLGELIFPGIYLNNQPLLLLGAAATALLALALDALFAGAGSLYLRRRGLAR
HHHHCCCHHHHHHCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC
>Mature Secondary Structure 
SKQSVRVAAWGCLTVLALGGLAAWIGVDVIRQHQDRLLYDVADHMRLVVFSMALALATG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPAGIALSRPRMRRWADRLMQIFNVGNTVPSLAVLALALAVLGIGERPAILALWLASLLP
CCCCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
IVRNTYEGLRNVSPTLLEAARGIGMTPFQRLLRVELPNALPVMLAGIRISLVINVGTVPL
HHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHEEEEEEEECCHHH
SFLIGANSLGELIFPGIYLNNQPLLLLGAAATALLALALDALFAGAGSLYLRRRGLAR
HHHHCCCHHHHHHCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]