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The map label for this gene is nlpD [C]

Identifier: 73541784

GI number: 73541784

Start: 2304160

End: 2305023

Strand: Reverse

Name: nlpD [C]

Synonym: Reut_A2096

Alternate gene names: 73541784

Gene position: 2305023-2304160 (Counterclockwise)

Preceding gene: 73541785

Following gene: 73541783

Centisome position: 60.55

GC content: 63.54

Gene sequence:

>864_bases
ATGCACAAGATCGTGAATTCGCAACAATTTGCACGCGCAGGCCAGCTTGTGGCGGCTTCCACGCTGGTGGCGCTGCTGGC
AGCCTGCGCCAACTCGCCGATGCCGGCACCCGTGGTGGACCGGACTTCCACTGCCGGCACTGCCCCTGCAGCCCCGCTGG
AGCCGGCACCCCCTGGGTACTATCGGGTCAAGCGAGGCGATACCCTTTACCGCATCGCGCTCGAGAACGGCCAGTCGTAC
CGCGATGTCGCGGGCTGGAACAATATCAGCAACGCCAACCAGATCGAGGTCGGCCAGTTGTTGCGTGTCGTGCCGCCAGG
CGCCGACGTCAACGCCGGCCAGGGCGTGACCACGACGCCGGTGGCGCCGGGCGCGATCCAGTCGCAGCCGATCGATCAGG
CGCGGCCGGCCGGCACGCCGGTGCCGCCGCCTGCAGCCACCACCGCGCCTGCGGCAGGTGCCGCAGCGTCCGCGGGCACG
TCAGGCCCGGTTGCGGACACCGCGATGAAACTTGCTTGGCCGGCAACCGGCCAACTGGTCGGTAAATTTGATGACAAGAG
CAATAAAGGCATCGATATTGCGGGCAAGAAAGGCGATGCCGTGCTCGCCGCCGACGACGGTCGGGTGATTCACGTTGGCC
CCTTGCGCGGCTACGGGAATCTTGTCATCATCAAACACAACGAGACATTTCTTACTGCCTACGGCCACAACGACAAGGTG
CTCGTGGCAGAGCAATCAACGGTCCGAAAGGGGCAGAAGATTGCGGAGATGGGCAATAGTGATACCGACCGGGTAAAGCT
TCACTTCGAAGTTCGCAAGAACGGAAAGCCGGTTGATCCGATGCGGTATCTGCCACCACAGTGA

Upstream 100 bases:

>100_bases
TGCTGCTGATCGAGCGGCTCAATCGGCATCGTTTTCACCGGACCGCGCTTGAAGCCGTTTTCTTTGTGCCCTTAAAATCG
GGCACCATCTGAGTCGAACT

Downstream 100 bases:

>100_bases
GGGTTCATGCCACGCCAGAAAACTGTCTCCTCCGGAACCGTCAGCAGGGCTCGCCGTCCCAAGCAGCCGGAAGTGAAGGC
TGGTGTGGCCCAAACCGACG

Product: peptidoglycan-binding LysM:peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MHKIVNSQQFARAGQLVAASTLVALLAACANSPMPAPVVDRTSTAGTAPAAPLEPAPPGYYRVKRGDTLYRIALENGQSY
RDVAGWNNISNANQIEVGQLLRVVPPGADVNAGQGVTTTPVAPGAIQSQPIDQARPAGTPVPPPAATTAPAAGAAASAGT
SGPVADTAMKLAWPATGQLVGKFDDKSNKGIDIAGKKGDAVLAADDGRVIHVGPLRGYGNLVIIKHNETFLTAYGHNDKV
LVAEQSTVRKGQKIAEMGNSDTDRVKLHFEVRKNGKPVDPMRYLPPQ

Sequences:

>Translated_287_residues
MHKIVNSQQFARAGQLVAASTLVALLAACANSPMPAPVVDRTSTAGTAPAAPLEPAPPGYYRVKRGDTLYRIALENGQSY
RDVAGWNNISNANQIEVGQLLRVVPPGADVNAGQGVTTTPVAPGAIQSQPIDQARPAGTPVPPPAATTAPAAGAAASAGT
SGPVADTAMKLAWPATGQLVGKFDDKSNKGIDIAGKKGDAVLAADDGRVIHVGPLRGYGNLVIIKHNETFLTAYGHNDKV
LVAEQSTVRKGQKIAEMGNSDTDRVKLHFEVRKNGKPVDPMRYLPPQ
>Mature_287_residues
MHKIVNSQQFARAGQLVAASTLVALLAACANSPMPAPVVDRTSTAGTAPAAPLEPAPPGYYRVKRGDTLYRIALENGQSY
RDVAGWNNISNANQIEVGQLLRVVPPGADVNAGQGVTTTPVAPGAIQSQPIDQARPAGTPVPPPAATTAPAAGAAASAGT
SGPVADTAMKLAWPATGQLVGKFDDKSNKGIDIAGKKGDAVLAADDGRVIHVGPLRGYGNLVIIKHNETFLTAYGHNDKV
LVAEQSTVRKGQKIAEMGNSDTDRVKLHFEVRKNGKPVDPMRYLPPQ

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=37.3540856031128, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI87082174, Length=266, Percent_Identity=37.218045112782, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI87082297, Length=118, Percent_Identity=36.4406779661017, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 29828; Mature: 29828

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKIVNSQQFARAGQLVAASTLVALLAACANSPMPAPVVDRTSTAGTAPAAPLEPAPPGY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRVKRGDTLYRIALENGQSYRDVAGWNNISNANQIEVGQLLRVVPPGADVNAGQGVTTTP
EEEECCCEEEEEEECCCCCCHHHCCCCCCCCCCEEEHHHHHEECCCCCCCCCCCCCEECC
VAPGAIQSQPIDQARPAGTPVPPPAATTAPAAGAAASAGTSGPVADTAMKLAWPATGQLV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEECCCCCCEE
GKFDDKSNKGIDIAGKKGDAVLAADDGRVIHVGPLRGYGNLVIIKHNETFLTAYGHNDKV
EECCCCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCEE
LVAEQSTVRKGQKIAEMGNSDTDRVKLHFEVRKNGKPVDPMRYLPPQ
EEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MHKIVNSQQFARAGQLVAASTLVALLAACANSPMPAPVVDRTSTAGTAPAAPLEPAPPGY
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRVKRGDTLYRIALENGQSYRDVAGWNNISNANQIEVGQLLRVVPPGADVNAGQGVTTTP
EEEECCCEEEEEEECCCCCCHHHCCCCCCCCCCEEEHHHHHEECCCCCCCCCCCCCEECC
VAPGAIQSQPIDQARPAGTPVPPPAATTAPAAGAAASAGTSGPVADTAMKLAWPATGQLV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHEEEECCCCCCEE
GKFDDKSNKGIDIAGKKGDAVLAADDGRVIHVGPLRGYGNLVIIKHNETFLTAYGHNDKV
EECCCCCCCCEEEECCCCCEEEEECCCCEEEEECCCCCCCEEEEEECCEEEEEECCCCEE
LVAEQSTVRKGQKIAEMGNSDTDRVKLHFEVRKNGKPVDPMRYLPPQ
EEECCHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]