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The map label for this gene is ygbK [C]

Identifier: 73541120

GI number: 73541120

Start: 1542503

End: 1543801

Strand: Reverse

Name: ygbK [C]

Synonym: Reut_A1426

Alternate gene names: 73541120

Gene position: 1543801-1542503 (Counterclockwise)

Preceding gene: 73541121

Following gene: 73541119

Centisome position: 40.56

GC content: 67.59

Gene sequence:

>1299_bases
ATGACCGCCATCCAGCAACAAGATCGCCCGCTGCTCGGCTGCATCGCCGACGACTTCACCGGCGCCACCGACCTCGCCAA
TACGCTCGTGCGCAACGGCATGCGCACTGTGCAGACGATCGGCGTGCCCGACGCGCACGCCGTACGGGACGTCGGCCAGG
CCGATGCAATCGTGGTCGCACTGAAGTCGCGCACCATTCCCGCCGCCGACGCCGTGTCGCAATCGTTGGCCGCGCTCGAA
TGGCTGCGCGCGCAGGGCTGCCGGCAGTTCGTTTTCAAGTACTGCTCGACATTCGATTCGACCGACGCTGGCAATATCGG
CCCGGTCGCCGAAGCCCTGCTCGCGGCACTGGACAGCGATTTCACGATCGCCTGCCCGGCCTTCCCCGAGAATGGACGCA
CCATTTTCCGCGGCCACCTGTTTGTCGGCGATGGACTGCTGAACGAATCGGGCATGGAGAACCATCCGCTCACGCCGATG
CGCGACGCAAACCTTGTGCGCGTGCTGCAGCGGCAGAGCAAAGCGAAGGTCGGTCTGCTGCGCTATGACGCTGTTGCACG
GGGTCCCGCTGCCACGACAGCGCGCATCGAAGCGCTGCGCGCCGATGGCAATCACCTTGCGATTGCCGACGCCGTGTCCG
ACGCCGACTTGTTCACCCTTGGCGAAGCATGCGCGAACCTGCCGCTGATCACTGGCGGGTCGGGCATCGCGCTCGGCCTG
CCCGAGAACTTCCGCCGCGCAGGCCTGCTGCCGCAGCGCGGCGATGCCGCGTCCGTCCCGCGTGTCGACGGCCATGGCGT
AGTGCTGGCCGGCAGCGCCTCTCGTGCGACGAACGGACAGGTGGCACGCTGGCTCGAACAGGGCCGTCCCGCGCTGCGCA
TCGATCCGCTCGCGCTCGCACGCGGCGAAGCCATTGTGGATACAGCGCTTGCCTTCGCCGCGAACCATGACGAGCCAGTG
CTGATCTACGCGACCTCCAGTCCCGATGAAGTCAAAGCCGTGCAGGCCGAACTCGGCGTGGAACGTGCCGGTCATCTGGT
CGAACAAGCGCTGGCCGGCATCGCCGCAGGCCTGCTCGCACGTGGCACGCGCCGCTTTGTCGTCGCGGGTGGCGAGACTT
CCGGCGCCGTCGTGCAGGCGCTTGGCGTCCGCGCATTGCGTATCGGCGCACAGATCGCGCCGGGCGTGCCCGCGACCGTC
ACGCTCGATGCGCAGCCCCTCGCGCTAGCGTTGAAATCGGGCAACTTCGGCGGCGAGGACTTCTTCGCCGAAGCGCTCGC
GCAACTCGGAGGCCAGTGA

Upstream 100 bases:

>100_bases
GCCTCCACCGCCGGCCACGGCGGCGAAGACGATTCCGCCGTGATCAAGATCTTCCCCGGCATCGAACTGCCGGCCAAGGC
AGAGTGAGGCGAAGCACGTC

Downstream 100 bases:

>100_bases
TGAGCCAGGAAAGCAAGCTGCGCGAAGAGATCTGCCGCATCGGCGCTAGCCTGTACCAGCGCGGCTATACCGTTGGCTCG
GCCGGCAATATCAGCGCGCG

Product: Type III effector Hrp-dependent outers

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MTAIQQQDRPLLGCIADDFTGATDLANTLVRNGMRTVQTIGVPDAHAVRDVGQADAIVVALKSRTIPAADAVSQSLAALE
WLRAQGCRQFVFKYCSTFDSTDAGNIGPVAEALLAALDSDFTIACPAFPENGRTIFRGHLFVGDGLLNESGMENHPLTPM
RDANLVRVLQRQSKAKVGLLRYDAVARGPAATTARIEALRADGNHLAIADAVSDADLFTLGEACANLPLITGGSGIALGL
PENFRRAGLLPQRGDAASVPRVDGHGVVLAGSASRATNGQVARWLEQGRPALRIDPLALARGEAIVDTALAFAANHDEPV
LIYATSSPDEVKAVQAELGVERAGHLVEQALAGIAAGLLARGTRRFVVAGGETSGAVVQALGVRALRIGAQIAPGVPATV
TLDAQPLALALKSGNFGGEDFFAEALAQLGGQ

Sequences:

>Translated_432_residues
MTAIQQQDRPLLGCIADDFTGATDLANTLVRNGMRTVQTIGVPDAHAVRDVGQADAIVVALKSRTIPAADAVSQSLAALE
WLRAQGCRQFVFKYCSTFDSTDAGNIGPVAEALLAALDSDFTIACPAFPENGRTIFRGHLFVGDGLLNESGMENHPLTPM
RDANLVRVLQRQSKAKVGLLRYDAVARGPAATTARIEALRADGNHLAIADAVSDADLFTLGEACANLPLITGGSGIALGL
PENFRRAGLLPQRGDAASVPRVDGHGVVLAGSASRATNGQVARWLEQGRPALRIDPLALARGEAIVDTALAFAANHDEPV
LIYATSSPDEVKAVQAELGVERAGHLVEQALAGIAAGLLARGTRRFVVAGGETSGAVVQALGVRALRIGAQIAPGVPATV
TLDAQPLALALKSGNFGGEDFFAEALAQLGGQ
>Mature_431_residues
TAIQQQDRPLLGCIADDFTGATDLANTLVRNGMRTVQTIGVPDAHAVRDVGQADAIVVALKSRTIPAADAVSQSLAALEW
LRAQGCRQFVFKYCSTFDSTDAGNIGPVAEALLAALDSDFTIACPAFPENGRTIFRGHLFVGDGLLNESGMENHPLTPMR
DANLVRVLQRQSKAKVGLLRYDAVARGPAATTARIEALRADGNHLAIADAVSDADLFTLGEACANLPLITGGSGIALGLP
ENFRRAGLLPQRGDAASVPRVDGHGVVLAGSASRATNGQVARWLEQGRPALRIDPLALARGEAIVDTALAFAANHDEPVL
IYATSSPDEVKAVQAELGVERAGHLVEQALAGIAAGLLARGTRRFVVAGGETSGAVVQALGVRALRIGAQIAPGVPATVT
LDAQPLALALKSGNFGGEDFFAEALAQLGGQ

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=392, Percent_Identity=44.3877551020408, Blast_Score=306, Evalue=1e-84,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 44775; Mature: 44644

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIQQQDRPLLGCIADDFTGATDLANTLVRNGMRTVQTIGVPDAHAVRDVGQADAIVVA
CCCCCCCCCCEEEEHHHCCCCHHHHHHHHHHCCHHHEEECCCCCHHHHHHCCCCCEEEEE
LKSRTIPAADAVSQSLAALEWLRAQGCRQFVFKYCSTFDSTDAGNIGPVAEALLAALDSD
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
FTIACPAFPENGRTIFRGHLFVGDGLLNESGMENHPLTPMRDANLVRVLQRQSKAKVGLL
CEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEE
RYDAVARGPAATTARIEALRADGNHLAIADAVSDADLFTLGEACANLPLITGGSGIALGL
EEHHHHCCCCCHHHHHHHEECCCCEEEEEECCCCCHHHHHHHHHHCCCEEECCCEEEECC
PENFRRAGLLPQRGDAASVPRVDGHGVVLAGSASRATNGQVARWLEQGRPALRIDPLALA
CHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEECHHHHH
RGEAIVDTALAFAANHDEPVLIYATSSPDEVKAVQAELGVERAGHLVEQALAGIAAGLLA
CCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
RGTRRFVVAGGETSGAVVQALGVRALRIGAQIAPGVPATVTLDAQPLALALKSGNFGGED
CCCEEEEEECCCCCCHHHHHHHHHHHHHCCEECCCCCEEEEECCCCEEEEEECCCCCCHH
FFAEALAQLGGQ
HHHHHHHHHCCC
>Mature Secondary Structure 
TAIQQQDRPLLGCIADDFTGATDLANTLVRNGMRTVQTIGVPDAHAVRDVGQADAIVVA
CCCCCCCCCEEEEHHHCCCCHHHHHHHHHHCCHHHEEECCCCCHHHHHHCCCCCEEEEE
LKSRTIPAADAVSQSLAALEWLRAQGCRQFVFKYCSTFDSTDAGNIGPVAEALLAALDSD
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
FTIACPAFPENGRTIFRGHLFVGDGLLNESGMENHPLTPMRDANLVRVLQRQSKAKVGLL
CEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEE
RYDAVARGPAATTARIEALRADGNHLAIADAVSDADLFTLGEACANLPLITGGSGIALGL
EEHHHHCCCCCHHHHHHHEECCCCEEEEEECCCCCHHHHHHHHHHCCCEEECCCEEEECC
PENFRRAGLLPQRGDAASVPRVDGHGVVLAGSASRATNGQVARWLEQGRPALRIDPLALA
CHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEECHHHHH
RGEAIVDTALAFAANHDEPVLIYATSSPDEVKAVQAELGVERAGHLVEQALAGIAAGLLA
CCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
RGTRRFVVAGGETSGAVVQALGVRALRIGAQIAPGVPATVTLDAQPLALALKSGNFGGED
CCCEEEEEECCCCCCHHHHHHHHHHHHHCCEECCCCCEEEEECCCCEEEEEECCCCCCHH
FFAEALAQLGGQ
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]