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The map label for this gene is yncD [H]

Identifier: 73538076

GI number: 73538076

Start: 901195

End: 903291

Strand: Direct

Name: yncD [H]

Synonym: Reut_B4246

Alternate gene names: 73538076

Gene position: 901195-903291 (Clockwise)

Preceding gene: 73538075

Following gene: 73538079

Centisome position: 33.06

GC content: 64.19

Gene sequence:

>2097_bases
ATGAAAGGAGCCAGACACTGGCGGCGCGCCGCAGCGCTGCCAGCCGCCGCATTGACGGGCGCCGCAATCGCGCAGACCGC
CCCGGTTACGGGGCCGGAGCCTGTGACACTGCCGACCGTCACTGCCACGGCCAAAGCCGAAGGCTCGCTGACCGTGCCGG
GCGTCGCCAGGCAACGGGAATCTCTGTACCAGTCGGCCGGTTCAGTGGGCTTTGTCGACGCCGAGAGCTACGCCAATACC
TACGCGAGCAACCTGCGCGACGTCCTGAAGGATGCTCCGGGCGTCTACGTGCAGGAGCGCTATGGACAGGAATTGCGCCT
GTCCGTTCGCGGCTCCGGCATCGCGCGCGGATTCCATACACGGGGCCTGGAAATCCTGCAGGACGGCGTGCCCACCAATT
TCGCCGACGGCAGCGGCGACTTCTACCAAATCGACCCGATCGGCCTCAACGCAGCGGAGGTCTACAAGGGCGGCAATGGC
CTGGCCTATGGCAGCACGACGCTGGGCGGCGCGATCAACTTCACCACGCCCACCGCGTTCACCACCGAAGCGCCCAACCA
GGTGCGCGTCGATGGCGGCAGCTTCGGCACGGTCCGCGCGGCCGGCCAGGCCTCGCGCCAGATCGGCAACTTCGATTTCA
TGGCCAACCTGAGCGTCGACCACTCGGAAGGCTATCGCGACCATGAGCGTGGCCAGTACGAACAGCTCAATGCAAACTTC
GGTTATCGCTTCAGCCCGACCGTCGAGACGCGCTTCTACGTCGGCGCCTATGTCGTCGACCAGCTGCTGCCCGGCACGCT
GTCGCTACAGGACGCACTGAACAACCCGACGAAGGCCTCTGCCAGCGCGCTCGCCGGCGACCAGGCGCGCAATACGCGCA
CCGAGCGGCTGGCCAACGTCACCACGGTGAAGCTCGACAGCGGCCAGCTCGACTTTTCCACATGGGTGATCCACAAGAAC
CTGTACCACCCGATCTTCCAGGTTATCGACCAGGACTACTGGACCTATGGCTTCGCGCCGCGCTACACGGGCACGCAGAC
CATTGGCGGCATGCGCAACCAGCTCATCGCCGGCGCAAGGTTTTTTGGCGGCAACAACGATGCGCGCCAGTACGTGAACG
TCTCGGGCGACCGCGGCGCACAGACGCTCAATTCCCGGCAGGATGCCTACAACTACGAGGCCTACTTCGAAGACCGCCTC
TACGTCATGCCCACGGTGGCGGTGATGGCCGGCGCCAAGGCTTACTACAACCAGCGCCGCTACACCGACTATGGCGGCCT
GCCCGCCAATCCGGTGCCCAAGTCCGACGACACCACGTACAGCGGCGTGAACCCGAAATTCGGCGTGCTTTGGGAACCGG
CCAAGGACATTCAGGCGTTTGCCGACATCACCCGCAGCGCCGATGTGCCGGACTTCAGCGACCTGAACCAGACCATCAGC
ACCACGACGCAGTTCGTGCCGCTTTCCGCCCAGCATGGCTGGACGCTGGAACTTGGGACACGCGGGCGCCGCGAGCGGCT
CGGATGGGATCTCACGCTGTACCGCTCGCTGGTGCGCGACCAGTTGCTGCAGTACACGACCAATCCCAACGTGCCGGCTG
CCACGTTCAACGCTAATCGCACCACGCTGCAAGGCGTAGAACTCGGCGTCAGCGCGGACCTGCTGCAGAACGTCGCCACC
ACGGCCGACAAGGTCACGCTGTCGCAACTATGGAACTACAGCGATTTCCGCTTCGACAACGACCCGCAATACGGCAACAA
CCGCATTGCAGGCGTGCCCGAGCACGTGCTGCGTACCACGCTGGCGTACAGCCAGGCGTCAGGGCTGCGCATCGCAGGCA
CCATCGACTGGGTACCGACCGGCGCTTACGTCGACTACGCAAACACGCTCAAGGTGCCGTCGTACGTGCTGTTCGGCGTG
CAGGCCAGCTACGATTTCAAGCAAGGCCTGACGGTGTTCCTCGATGCGCGCAACCTAGGCAACAAGCGTTATGTGAGCGA
TTTCAGCACAGTGACCGATGCGCGCACCGCCAATACGGCAGTGTTCTATCCCGGTACCGGGCGAGCACTCTATGCAGGCG
TGCGCTACAAGTTCTGA

Upstream 100 bases:

>100_bases
CGAGGCGTGCTGCGCTCCGTATCCTTGCCGGCTATCGAATTACACTCAGAGCACTGGTCCCTGCCAAAACGGGGCGCCAA
TGTGCCGGCAAAGGGAAATC

Downstream 100 bases:

>100_bases
CTGTTTGCTACGGTCCGTGCAAAACAAAAGGCCGCGTCCCCGGGGACGCGGCCTTTTCACTTGGCTGCCAGACGCAGCTC
AGTTCACTCGCTCAACCGGG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MKGARHWRRAAALPAAALTGAAIAQTAPVTGPEPVTLPTVTATAKAEGSLTVPGVARQRESLYQSAGSVGFVDAESYANT
YASNLRDVLKDAPGVYVQERYGQELRLSVRGSGIARGFHTRGLEILQDGVPTNFADGSGDFYQIDPIGLNAAEVYKGGNG
LAYGSTTLGGAINFTTPTAFTTEAPNQVRVDGGSFGTVRAAGQASRQIGNFDFMANLSVDHSEGYRDHERGQYEQLNANF
GYRFSPTVETRFYVGAYVVDQLLPGTLSLQDALNNPTKASASALAGDQARNTRTERLANVTTVKLDSGQLDFSTWVIHKN
LYHPIFQVIDQDYWTYGFAPRYTGTQTIGGMRNQLIAGARFFGGNNDARQYVNVSGDRGAQTLNSRQDAYNYEAYFEDRL
YVMPTVAVMAGAKAYYNQRRYTDYGGLPANPVPKSDDTTYSGVNPKFGVLWEPAKDIQAFADITRSADVPDFSDLNQTIS
TTTQFVPLSAQHGWTLELGTRGRRERLGWDLTLYRSLVRDQLLQYTTNPNVPAATFNANRTTLQGVELGVSADLLQNVAT
TADKVTLSQLWNYSDFRFDNDPQYGNNRIAGVPEHVLRTTLAYSQASGLRIAGTIDWVPTGAYVDYANTLKVPSYVLFGV
QASYDFKQGLTVFLDARNLGNKRYVSDFSTVTDARTANTAVFYPGTGRALYAGVRYKF

Sequences:

>Translated_698_residues
MKGARHWRRAAALPAAALTGAAIAQTAPVTGPEPVTLPTVTATAKAEGSLTVPGVARQRESLYQSAGSVGFVDAESYANT
YASNLRDVLKDAPGVYVQERYGQELRLSVRGSGIARGFHTRGLEILQDGVPTNFADGSGDFYQIDPIGLNAAEVYKGGNG
LAYGSTTLGGAINFTTPTAFTTEAPNQVRVDGGSFGTVRAAGQASRQIGNFDFMANLSVDHSEGYRDHERGQYEQLNANF
GYRFSPTVETRFYVGAYVVDQLLPGTLSLQDALNNPTKASASALAGDQARNTRTERLANVTTVKLDSGQLDFSTWVIHKN
LYHPIFQVIDQDYWTYGFAPRYTGTQTIGGMRNQLIAGARFFGGNNDARQYVNVSGDRGAQTLNSRQDAYNYEAYFEDRL
YVMPTVAVMAGAKAYYNQRRYTDYGGLPANPVPKSDDTTYSGVNPKFGVLWEPAKDIQAFADITRSADVPDFSDLNQTIS
TTTQFVPLSAQHGWTLELGTRGRRERLGWDLTLYRSLVRDQLLQYTTNPNVPAATFNANRTTLQGVELGVSADLLQNVAT
TADKVTLSQLWNYSDFRFDNDPQYGNNRIAGVPEHVLRTTLAYSQASGLRIAGTIDWVPTGAYVDYANTLKVPSYVLFGV
QASYDFKQGLTVFLDARNLGNKRYVSDFSTVTDARTANTAVFYPGTGRALYAGVRYKF
>Mature_698_residues
MKGARHWRRAAALPAAALTGAAIAQTAPVTGPEPVTLPTVTATAKAEGSLTVPGVARQRESLYQSAGSVGFVDAESYANT
YASNLRDVLKDAPGVYVQERYGQELRLSVRGSGIARGFHTRGLEILQDGVPTNFADGSGDFYQIDPIGLNAAEVYKGGNG
LAYGSTTLGGAINFTTPTAFTTEAPNQVRVDGGSFGTVRAAGQASRQIGNFDFMANLSVDHSEGYRDHERGQYEQLNANF
GYRFSPTVETRFYVGAYVVDQLLPGTLSLQDALNNPTKASASALAGDQARNTRTERLANVTTVKLDSGQLDFSTWVIHKN
LYHPIFQVIDQDYWTYGFAPRYTGTQTIGGMRNQLIAGARFFGGNNDARQYVNVSGDRGAQTLNSRQDAYNYEAYFEDRL
YVMPTVAVMAGAKAYYNQRRYTDYGGLPANPVPKSDDTTYSGVNPKFGVLWEPAKDIQAFADITRSADVPDFSDLNQTIS
TTTQFVPLSAQHGWTLELGTRGRRERLGWDLTLYRSLVRDQLLQYTTNPNVPAATFNANRTTLQGVELGVSADLLQNVAT
TADKVTLSQLWNYSDFRFDNDPQYGNNRIAGVPEHVLRTTLAYSQASGLRIAGTIDWVPTGAYVDYANTLKVPSYVLFGV
QASYDFKQGLTVFLDARNLGNKRYVSDFSTVTDARTANTAVFYPGTGRALYAGVRYKF

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=714, Percent_Identity=22.8291316526611, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1790743, Length=714, Percent_Identity=20.5882352941176, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76250; Mature: 76250

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGARHWRRAAALPAAALTGAAIAQTAPVTGPEPVTLPTVTATAKAEGSLTVPGVARQRE
CCCHHHHHHHHCCCHHHHHCHHHHHCCCCCCCCCEEECEEEEECCCCCCEECCCHHHHHH
SLYQSAGSVGFVDAESYANTYASNLRDVLKDAPGVYVQERYGQELRLSVRGSGIARGFHT
HHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEHHCCCEEEEEECCCCEECCHHH
RGLEILQDGVPTNFADGSGDFYQIDPIGLNAAEVYKGGNGLAYGSTTLGGAINFTTPTAF
CCHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHEECCCCEEECCCCCCCEEEECCCCEE
TTEAPNQVRVDGGSFGTVRAAGQASRQIGNFDFMANLSVDHSEGYRDHERGQYEQLNANF
ECCCCCEEEECCCCCCEEEECCHHHHHCCCEEEEEEECCCCCCCCCCHHCCCCEEECCCC
GYRFSPTVETRFYVGAYVVDQLLPGTLSLQDALNNPTKASASALAGDQARNTRTERLANV
CEEECCCCCCEEEHHHHHHHHHCCCCEEHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCE
TTVKLDSGQLDFSTWVIHKNLYHPIFQVIDQDYWTYGFAPRYTGTQTIGGMRNQLIAGAR
EEEEECCCCCEEEEEEEEHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHE
FFGGNNDARQYVNVSGDRGAQTLNSRQDAYNYEAYFEDRLYVMPTVAVMAGAKAYYNQRR
EECCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHCHHHHHCCCC
YTDYGGLPANPVPKSDDTTYSGVNPKFGVLWEPAKDIQAFADITRSADVPDFSDLNQTIS
CCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHH
TTTQFVPLSAQHGWTLELGTRGRRERLGWDLTLYRSLVRDQLLQYTTNPNVPAATFNANR
CCEEEEEECCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
TTLQGVELGVSADLLQNVATTADKVTLSQLWNYSDFRFDNDPQYGNNRIAGVPEHVLRTT
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LAYSQASGLRIAGTIDWVPTGAYVDYANTLKVPSYVLFGVQASYDFKQGLTVFLDARNLG
HHHHCCCCEEEEEEEEEEECCCEEECCCCCCCCCEEEEEEECCCCHHCCCEEEEECCCCC
NKRYVSDFSTVTDARTANTAVFYPGTGRALYAGVRYKF
CCHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECC
>Mature Secondary Structure
MKGARHWRRAAALPAAALTGAAIAQTAPVTGPEPVTLPTVTATAKAEGSLTVPGVARQRE
CCCHHHHHHHHCCCHHHHHCHHHHHCCCCCCCCCEEECEEEEECCCCCCEECCCHHHHHH
SLYQSAGSVGFVDAESYANTYASNLRDVLKDAPGVYVQERYGQELRLSVRGSGIARGFHT
HHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEHHCCCEEEEEECCCCEECCHHH
RGLEILQDGVPTNFADGSGDFYQIDPIGLNAAEVYKGGNGLAYGSTTLGGAINFTTPTAF
CCHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHHEECCCCEEECCCCCCCEEEECCCCEE
TTEAPNQVRVDGGSFGTVRAAGQASRQIGNFDFMANLSVDHSEGYRDHERGQYEQLNANF
ECCCCCEEEECCCCCCEEEECCHHHHHCCCEEEEEEECCCCCCCCCCHHCCCCEEECCCC
GYRFSPTVETRFYVGAYVVDQLLPGTLSLQDALNNPTKASASALAGDQARNTRTERLANV
CEEECCCCCCEEEHHHHHHHHHCCCCEEHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCE
TTVKLDSGQLDFSTWVIHKNLYHPIFQVIDQDYWTYGFAPRYTGTQTIGGMRNQLIAGAR
EEEEECCCCCEEEEEEEEHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHE
FFGGNNDARQYVNVSGDRGAQTLNSRQDAYNYEAYFEDRLYVMPTVAVMAGAKAYYNQRR
EECCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHCHHHHHCCCC
YTDYGGLPANPVPKSDDTTYSGVNPKFGVLWEPAKDIQAFADITRSADVPDFSDLNQTIS
CCCCCCCCCCCCCCCCCCEECCCCCCCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHH
TTTQFVPLSAQHGWTLELGTRGRRERLGWDLTLYRSLVRDQLLQYTTNPNVPAATFNANR
CCEEEEEECCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
TTLQGVELGVSADLLQNVATTADKVTLSQLWNYSDFRFDNDPQYGNNRIAGVPEHVLRTT
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
LAYSQASGLRIAGTIDWVPTGAYVDYANTLKVPSYVLFGVQASYDFKQGLTVFLDARNLG
HHHHCCCCEEEEEEEEEEECCCEEECCCCCCCCCEEEEEEECCCCHHCCCEEEEECCCCC
NKRYVSDFSTVTDARTANTAVFYPGTGRALYAGVRYKF
CCHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]