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The map label for this gene is cbiD

Identifier: 71907320

GI number: 71907320

Start: 1818764

End: 1819945

Strand: Reverse

Name: cbiD

Synonym: Daro_1690

Alternate gene names: 71907320

Gene position: 1819945-1818764 (Counterclockwise)

Preceding gene: 71907321

Following gene: 71907319

Centisome position: 40.43

GC content: 64.55

Gene sequence:

>1182_bases
ATGAGCGATGAAACCAGGGTGGGCGAGGCGGCGGAACAAGCCGCCACGCCTGAAAAAATACGCAAGGGAAGCGCCAGGCG
GGAACGCGGCAATCGCACCGGCTTCACCACCGGCGCCTGTTCCGCCGCCGCCGCCCGTGCCGCAACGCTCGGCCTGCTGC
TCAGCGAAGTACCGGACACAGTGATCTGCCGCCTGCCCAACGGTCAGGAGCAAGCCTTTGCCGTCACCGATGGCTGCGTC
GAGGAATCCTCCGGCCTGGCCCATGCCGTGATCATCAAGGATGCCGGCGATGACCCGGACGCCACGCATGGCGCGCACAT
GACGGCCGATGTGCGGCTGTTGCCCGATCGGGCTGGCGAAATCGTCCTCAAGGGCGGTTTCGGCGTCGGCGTCGTGACCA
AGGACGGTCTTGGGCTGGAAGTCGGCGGCCCGGCAATCAACCCGGTGCCGCGCCGCAATATCCTCGACAACGTGCGCGCC
GTTGCCGGCGAGTTACTCGACCACGATGGCCTGGAAGTCACCATTTCCGTGCCGGGCGGCGACGAGATGGCGAAAAAGAC
GCTGAATGCGCGGCTCGGCATCCTCGGCGGCATTTCCATCCTCGGCACCACCGGCATCGTCCGTCCCTACTCGACGGCCG
CCTTCCGGGCCAGCGTCGTGCAGGCCGTGGATGTGGCGGCCAAACAGGGCCAGACCAGCGTCGTTTTCACGACGGGCGGG
CGCACCGAGAAATTCGCCATGCGCCAATTGCCGGACCTCGACGAATCCTGTTTCGTCCAGATGGGCGACTTCGTCAAGGC
CGCCTTCAGCAGCGCCATCAAGCACAAGTTGCCCACCGTTTATGTCGGGGCGATGGTCGGCAAGCTGACCAAGATGTGCC
AGGGGCTGGCCGTCACGCACGCCTGGAAGGCGGAGGTCGACCGCGACATCCTGGCCGATTCGGCGCGTGAAGTTGGCGCC
CCGGATGATCTGATCGAGGAAATCCGCTCGGCCGAAACCGCGCGCTTTGCCGCCGAACGGCTGGCCAGCCTCGGTCTTGC
CGTGACTTTTCATCGCCAACTGGCCATCAAGGCCATCCGCAGTCTCAAGGACAAGTACCCCGGCAATTACCGCCTGGCCG
TGCTGGTCTGCGATTTCGAAGGTCAATTTATTTGTCGGGTGAATGAAGATGAAGCGCTCTGA

Upstream 100 bases:

>100_bases
AAGGGGCGCAAGGGCGGCTCGACCCTGGTGGTTGCGGCAATCCACGCCATGCTGTCGCTGGCCGAGGCCGAACAGCACAA
GTCGGTGGCCTGAGTCCGGC

Downstream 100 bases:

>100_bases
TCAATGTGCCTTGATTGGCATTCTCGATGACGGCTGGGCGGGTTTGTCCGAAACCGCCCGCCAGCGTCTGGCGGCAGCCG
ATATCGTGATCGGTGCCGGG

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MSDETRVGEAAEQAATPEKIRKGSARRERGNRTGFTTGACSAAAARAATLGLLLSEVPDTVICRLPNGQEQAFAVTDGCV
EESSGLAHAVIIKDAGDDPDATHGAHMTADVRLLPDRAGEIVLKGGFGVGVVTKDGLGLEVGGPAINPVPRRNILDNVRA
VAGELLDHDGLEVTISVPGGDEMAKKTLNARLGILGGISILGTTGIVRPYSTAAFRASVVQAVDVAAKQGQTSVVFTTGG
RTEKFAMRQLPDLDESCFVQMGDFVKAAFSSAIKHKLPTVYVGAMVGKLTKMCQGLAVTHAWKAEVDRDILADSAREVGA
PDDLIEEIRSAETARFAAERLASLGLAVTFHRQLAIKAIRSLKDKYPGNYRLAVLVCDFEGQFICRVNEDEAL

Sequences:

>Translated_393_residues
MSDETRVGEAAEQAATPEKIRKGSARRERGNRTGFTTGACSAAAARAATLGLLLSEVPDTVICRLPNGQEQAFAVTDGCV
EESSGLAHAVIIKDAGDDPDATHGAHMTADVRLLPDRAGEIVLKGGFGVGVVTKDGLGLEVGGPAINPVPRRNILDNVRA
VAGELLDHDGLEVTISVPGGDEMAKKTLNARLGILGGISILGTTGIVRPYSTAAFRASVVQAVDVAAKQGQTSVVFTTGG
RTEKFAMRQLPDLDESCFVQMGDFVKAAFSSAIKHKLPTVYVGAMVGKLTKMCQGLAVTHAWKAEVDRDILADSAREVGA
PDDLIEEIRSAETARFAAERLASLGLAVTFHRQLAIKAIRSLKDKYPGNYRLAVLVCDFEGQFICRVNEDEAL
>Mature_392_residues
SDETRVGEAAEQAATPEKIRKGSARRERGNRTGFTTGACSAAAARAATLGLLLSEVPDTVICRLPNGQEQAFAVTDGCVE
ESSGLAHAVIIKDAGDDPDATHGAHMTADVRLLPDRAGEIVLKGGFGVGVVTKDGLGLEVGGPAINPVPRRNILDNVRAV
AGELLDHDGLEVTISVPGGDEMAKKTLNARLGILGGISILGTTGIVRPYSTAAFRASVVQAVDVAAKQGQTSVVFTTGGR
TEKFAMRQLPDLDESCFVQMGDFVKAAFSSAIKHKLPTVYVGAMVGKLTKMCQGLAVTHAWKAEVDRDILADSAREVGAP
DDLIEEIRSAETARFAAERLASLGLAVTFHRQLAIKAIRSLKDKYPGNYRLAVLVCDFEGQFICRVNEDEAL

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_DECAR (Q47FE4)

Other databases:

- EMBL:   CP000089
- RefSeq:   YP_284907.1
- ProteinModelPortal:   Q47FE4
- SMR:   Q47FE4
- STRING:   Q47FE4
- GeneID:   3568544
- GenomeReviews:   CP000089_GR
- KEGG:   dar:Daro_1690
- NMPDR:   fig|159087.4.peg.763
- eggNOG:   COG1903
- HOGENOM:   HBG705387
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- BioCyc:   DARO159087:DARO_1690-MONOMER
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 41508; Mature: 41377

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDETRVGEAAEQAATPEKIRKGSARRERGNRTGFTTGACSAAAARAATLGLLLSEVPDT
CCCCCCCCHHHHHCCCHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCE
VICRLPNGQEQAFAVTDGCVEESSGLAHAVIIKDAGDDPDATHGAHMTADVRLLPDRAGE
EEEECCCCCCCEEEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
IVLKGGFGVGVVTKDGLGLEVGGPAINPVPRRNILDNVRAVAGELLDHDGLEVTISVPGG
EEEECCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
DEMAKKTLNARLGILGGISILGTTGIVRPYSTAAFRASVVQAVDVAAKQGQTSVVFTTGG
HHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
RTEKFAMRQLPDLDESCFVQMGDFVKAAFSSAIKHKLPTVYVGAMVGKLTKMCQGLAVTH
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
AWKAEVDRDILADSAREVGAPDDLIEEIRSAETARFAAERLASLGLAVTFHRQLAIKAIR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
SLKDKYPGNYRLAVLVCDFEGQFICRVNEDEAL
HHHHHCCCCEEEEEEEEECCCCEEEEECCCCCC
>Mature Secondary Structure 
SDETRVGEAAEQAATPEKIRKGSARRERGNRTGFTTGACSAAAARAATLGLLLSEVPDT
CCCCCCCHHHHHCCCHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCE
VICRLPNGQEQAFAVTDGCVEESSGLAHAVIIKDAGDDPDATHGAHMTADVRLLPDRAGE
EEEECCCCCCCEEEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
IVLKGGFGVGVVTKDGLGLEVGGPAINPVPRRNILDNVRAVAGELLDHDGLEVTISVPGG
EEEECCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
DEMAKKTLNARLGILGGISILGTTGIVRPYSTAAFRASVVQAVDVAAKQGQTSVVFTTGG
HHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC
RTEKFAMRQLPDLDESCFVQMGDFVKAAFSSAIKHKLPTVYVGAMVGKLTKMCQGLAVTH
CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
AWKAEVDRDILADSAREVGAPDDLIEEIRSAETARFAAERLASLGLAVTFHRQLAIKAIR
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
SLKDKYPGNYRLAVLVCDFEGQFICRVNEDEAL
HHHHHCCCCEEEEEEEEECCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA