Click here to switch to the map view.

The map label for this gene is rnfC [H]

Identifier: 71906800

GI number: 71906800

Start: 1265315

End: 1267027

Strand: Reverse

Name: rnfC [H]

Synonym: Daro_1161

Alternate gene names: 71906800

Gene position: 1267027-1265315 (Counterclockwise)

Preceding gene: 71906801

Following gene: 71906799

Centisome position: 28.15

GC content: 62.93

Gene sequence:

>1713_bases
ATGCTGCAATTATTCAAGTTCAAGGGTGGCGTCAAACCAGCCACCAACAAGGTTCAGTCCGTCACCTTGCCGATTGCCAC
GGCACCGCTGCCCTCCCGCCTGGCCGTTCCTCTGCATCAGAGCATTGGTGGCACGCCGCGTCCCATCGTCGAGGTGGGTG
ACAAGGTACTCAAGGGCCAGAAAATCGGTGAAGCCGATGGCTGGATTTCCGCGGCTGTCCATGCCCCGACTTCCGGCACG
GTGATCGAGGTCGGCCTCTATCCGGCCGCCCATCCGTCCGGCCTGACGGCGGCGACCGTGGTTATTGAACCGGATGGCGA
GGATCGCTGGATCGACCGCCAGCCGGTCGATTACGCCTCACTGGAACCCGAAGCCGTGCGCGAACTGCTGCGCGAGGCCG
GCATTGTCGGTCTGGGCGGTGCCGTTTTCCCGACCCACGGCAAGCTGACTGCCTCGAAAACCGTTCCCATGGAGGAAATG
GTCATCAACGGGGCCGAATGTGAGCCCTATATCACCTGCGACGACCTGCTGATGCGCGAACGCGCCGAGGAAGTCGTGCG
TGGCGCCGGCGTTTTCCGCGACCTGCTGCGGCCGAAGAAGGTGCTGATCGGCATCGAGGACAACAAGCCGGAAGCCGCAG
CCGCCATGACGGCGGCCATCAAGGCGCTGGGCGAAGCGTTCAAGGAATTCGAAGTCGTCGTCGTCCCGACCCGTTACCCG
GCCGGTGGCGCCAAGCAGCTGATCCGCGTGCTGACTGGCAAGGAAGTGCCGGCCTCCAAGCGTTCGACTGATCTCGGCGT
CCAGTGCTTCAACGTCGCCACCGCCTACACGGCCTGGCGCGCCCTGGCCCATGGCGAACCGGTCATCTCCCGGCTGGTCA
CGATCACCGGCAATGTCGGCGAACCGCGCAACTGGGAAGTGCTGATCGGTACGCCGATGGACGAACTGCTCCGTATCGGC
CAGCCCAAACCGGATACCGATGGCATCATCATGGGTGGCCCGATGATGGGCTTCCTGGTGCCTGACACCAAGGCGCCGGT
GGTCAAGGCAACCAATTGCCTGATCGCCCATTCGCCAACGCTGTTCCCGCCCAAACCGCCCGAGATGCCGTGCATCCGCT
GCGGCGAATGCGCCCGGGCCTGCCCGCACGAACTGCAGCCTTTCGAAATGTACTGGTTCTCCCGCGCCAAGAATTTCGGC
AAGACCCAGGAATACGCCATCTTCGACTGCATCGAATGCGGTTGCTGCTCGTTCGTCTGCCCCTCACGCATCCCGCTCGT
CCAGTATTTCCGTTTTGCCAAGAGTGAAATCTGGGCCCGCGAACGGGAAAGCCAGGCGGCCGAAGGTGCCAAGAACCGTT
TCGAATTCAAGCAACTGCGCGAAGAGCGGGAAAAAGCCGAGAAAGCCGAAAAGCTGGCCAAGGCAGCCGCTGCCCAGGCC
GCCAAAAAGGCGGCTGAAGCCCTTGCCGCAGCCAATGCGCCTGAAACGACCGTCGCTGAGCCGGCTCCTGACGCCTCTAG
CGCCGCGGATGCTGCAAAAAGGGCAACCATCGAAGCCGCCATGGAACGGGCTAAAGCCCAGCGCGCCGCAGCCCAACCGA
AAAATGTCGATCACTTGCCCCCTGCTGTCGAGCAGGACATTGCCGAAATCGATGCGCGCCAGAACCAGGCCGTTATGGCC
AATGCAGCCCCGGACGGCGAGAAGAACAGCTAA

Upstream 100 bases:

>100_bases
CGCCCTGCCCGGTCGAATGCATTGCCATGGCCACCATCCCGGAAACCGTGGATAACTGGAAATGGAAATACCCGGTTACC
GAGATCAGGAAAGCTGCCTG

Downstream 100 bases:

>100_bases
ATCATGGAATTCAACACCTCCCCCTACCTGCTCAAGGAAGCTTCTGTCCAGCGGGTCATGCTCAAGGTCCTGCTGGCCCT
GCTGCCGGGCATTGCGGCTT

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 570; Mature: 570

Protein sequence:

>570_residues
MLQLFKFKGGVKPATNKVQSVTLPIATAPLPSRLAVPLHQSIGGTPRPIVEVGDKVLKGQKIGEADGWISAAVHAPTSGT
VIEVGLYPAAHPSGLTAATVVIEPDGEDRWIDRQPVDYASLEPEAVRELLREAGIVGLGGAVFPTHGKLTASKTVPMEEM
VINGAECEPYITCDDLLMRERAEEVVRGAGVFRDLLRPKKVLIGIEDNKPEAAAAMTAAIKALGEAFKEFEVVVVPTRYP
AGGAKQLIRVLTGKEVPASKRSTDLGVQCFNVATAYTAWRALAHGEPVISRLVTITGNVGEPRNWEVLIGTPMDELLRIG
QPKPDTDGIIMGGPMMGFLVPDTKAPVVKATNCLIAHSPTLFPPKPPEMPCIRCGECARACPHELQPFEMYWFSRAKNFG
KTQEYAIFDCIECGCCSFVCPSRIPLVQYFRFAKSEIWARERESQAAEGAKNRFEFKQLREEREKAEKAEKLAKAAAAQA
AKKAAEALAAANAPETTVAEPAPDASSAADAAKRATIEAAMERAKAQRAAAQPKNVDHLPPAVEQDIAEIDARQNQAVMA
NAAPDGEKNS

Sequences:

>Translated_570_residues
MLQLFKFKGGVKPATNKVQSVTLPIATAPLPSRLAVPLHQSIGGTPRPIVEVGDKVLKGQKIGEADGWISAAVHAPTSGT
VIEVGLYPAAHPSGLTAATVVIEPDGEDRWIDRQPVDYASLEPEAVRELLREAGIVGLGGAVFPTHGKLTASKTVPMEEM
VINGAECEPYITCDDLLMRERAEEVVRGAGVFRDLLRPKKVLIGIEDNKPEAAAAMTAAIKALGEAFKEFEVVVVPTRYP
AGGAKQLIRVLTGKEVPASKRSTDLGVQCFNVATAYTAWRALAHGEPVISRLVTITGNVGEPRNWEVLIGTPMDELLRIG
QPKPDTDGIIMGGPMMGFLVPDTKAPVVKATNCLIAHSPTLFPPKPPEMPCIRCGECARACPHELQPFEMYWFSRAKNFG
KTQEYAIFDCIECGCCSFVCPSRIPLVQYFRFAKSEIWARERESQAAEGAKNRFEFKQLREEREKAEKAEKLAKAAAAQA
AKKAAEALAAANAPETTVAEPAPDASSAADAAKRATIEAAMERAKAQRAAAQPKNVDHLPPAVEQDIAEIDARQNQAVMA
NAAPDGEKNS
>Mature_570_residues
MLQLFKFKGGVKPATNKVQSVTLPIATAPLPSRLAVPLHQSIGGTPRPIVEVGDKVLKGQKIGEADGWISAAVHAPTSGT
VIEVGLYPAAHPSGLTAATVVIEPDGEDRWIDRQPVDYASLEPEAVRELLREAGIVGLGGAVFPTHGKLTASKTVPMEEM
VINGAECEPYITCDDLLMRERAEEVVRGAGVFRDLLRPKKVLIGIEDNKPEAAAAMTAAIKALGEAFKEFEVVVVPTRYP
AGGAKQLIRVLTGKEVPASKRSTDLGVQCFNVATAYTAWRALAHGEPVISRLVTITGNVGEPRNWEVLIGTPMDELLRIG
QPKPDTDGIIMGGPMMGFLVPDTKAPVVKATNCLIAHSPTLFPPKPPEMPCIRCGECARACPHELQPFEMYWFSRAKNFG
KTQEYAIFDCIECGCCSFVCPSRIPLVQYFRFAKSEIWARERESQAAEGAKNRFEFKQLREEREKAEKAEKLAKAAAAQA
AKKAAEALAAANAPETTVAEPAPDASSAADAAKRATIEAAMERAKAQRAAAQPKNVDHLPPAVEQDIAEIDARQNQAVMA
NAAPDGEKNS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=547, Percent_Identity=43.8756855575868, Blast_Score=407, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 61246; Mature: 61246

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQLFKFKGGVKPATNKVQSVTLPIATAPLPSRLAVPLHQSIGGTPRPIVEVGDKVLKGQ
CCEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHCCCHHHHCCCCCCHHHHHHHHHHCCC
KIGEADGWISAAVHAPTSGTVIEVGLYPAAHPSGLTAATVVIEPDGEDRWIDRQPVDYAS
CCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
LEPEAVRELLREAGIVGLGGAVFPTHGKLTASKTVPMEEMVINGAECEPYITCDDLLMRE
CCHHHHHHHHHHCCEEECCCCCCCCCCCEECCCCCCHHHHHCCCCCCCCEECHHHHHHHH
RAEEVVRGAGVFRDLLRPKKVLIGIEDNKPEAAAAMTAAIKALGEAFKEFEVVVVPTRYP
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
AGGAKQLIRVLTGKEVPASKRSTDLGVQCFNVATAYTAWRALAHGEPVISRLVTITGNVG
CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCC
EPRNWEVLIGTPMDELLRIGQPKPDTDGIIMGGPMMGFLVPDTKAPVVKATNCLIAHSPT
CCCCCEEEEECCHHHHHHCCCCCCCCCCEEECCCEEEEECCCCCCCEEEECCEEEECCCC
LFPPKPPEMPCIRCGECARACPHELQPFEMYWFSRAKNFGKTQEYAIFDCIECGCCSFVC
CCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
PSRIPLVQYFRFAKSEIWARERESQAAEGAKNRFEFKQLREEREKAEKAEKLAKAAAAQA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKKAAEALAAANAPETTVAEPAPDASSAADAAKRATIEAAMERAKAQRAAAQPKNVDHLP
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PAVEQDIAEIDARQNQAVMANAAPDGEKNS
CHHHHHHHHHHCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MLQLFKFKGGVKPATNKVQSVTLPIATAPLPSRLAVPLHQSIGGTPRPIVEVGDKVLKGQ
CCEEEECCCCCCCCCCCCEEEEEEEECCCCCCHHCCCHHHHCCCCCCHHHHHHHHHHCCC
KIGEADGWISAAVHAPTSGTVIEVGLYPAAHPSGLTAATVVIEPDGEDRWIDRQPVDYAS
CCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
LEPEAVRELLREAGIVGLGGAVFPTHGKLTASKTVPMEEMVINGAECEPYITCDDLLMRE
CCHHHHHHHHHHCCEEECCCCCCCCCCCEECCCCCCHHHHHCCCCCCCCEECHHHHHHHH
RAEEVVRGAGVFRDLLRPKKVLIGIEDNKPEAAAAMTAAIKALGEAFKEFEVVVVPTRYP
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCC
AGGAKQLIRVLTGKEVPASKRSTDLGVQCFNVATAYTAWRALAHGEPVISRLVTITGNVG
CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCC
EPRNWEVLIGTPMDELLRIGQPKPDTDGIIMGGPMMGFLVPDTKAPVVKATNCLIAHSPT
CCCCCEEEEECCHHHHHHCCCCCCCCCCEEECCCEEEEECCCCCCCEEEECCEEEECCCC
LFPPKPPEMPCIRCGECARACPHELQPFEMYWFSRAKNFGKTQEYAIFDCIECGCCSFVC
CCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCC
PSRIPLVQYFRFAKSEIWARERESQAAEGAKNRFEFKQLREEREKAEKAEKLAKAAAAQA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKKAAEALAAANAPETTVAEPAPDASSAADAAKRATIEAAMERAKAQRAAAQPKNVDHLP
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PAVEQDIAEIDARQNQAVMANAAPDGEKNS
CHHHHHHHHHHCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]