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The map label for this gene is rnfD [H]

Identifier: 71906799

GI number: 71906799

Start: 1264295

End: 1265311

Strand: Reverse

Name: rnfD [H]

Synonym: Daro_1160

Alternate gene names: 71906799

Gene position: 1265311-1264295 (Counterclockwise)

Preceding gene: 71906800

Following gene: 71906798

Centisome position: 28.11

GC content: 60.18

Gene sequence:

>1017_bases
ATGGAATTCAACACCTCCCCCTACCTGCTCAAGGAAGCTTCTGTCCAGCGGGTCATGCTCAAGGTCCTGCTGGCCCTGCT
GCCGGGCATTGCGGCTTACGTCTGGCTATTCGGCCCGGCTATCCTGATTCATCTCGCCTTGACTACGATCACGGCGCTTG
TTGGCGAAGCGCTCATGCTCAAAGTGCGTCGCCGTCCGCTCGGCCTCTTTCTGCCCGATCTCTCGGCGGTAGTGACTGCC
TGGCTGATTACGCTGACCTTCCCACCGCTGGTTCCCTGGTGGTTGACGGTGACAGCGACCCTGTTCGCCATCGTTATCGC
CAAACAACTTTACGGCGGCCTCGGGCAAAACCCGTTCAACCCGGCAATGATTGCCTTTGCCGTATCCATTGTTTCCTTCC
CGGCGCTGATGTCGCAATGGCCCGGTACCGAAGGCCATTTTTCCAGCCAACTGCAAGTCATTTTTGGTCTTGCCCCCCGG
CTTGACGGCCTCACCTCGGCAACACCACTGGACGCCATGAAGACGGCGCTGATGCTGGCCGGAGACTCGCATTCCACATC
TGTTTCCAGCATCCTGGCCAACCCGGAGGTTTTTGGTCTGGTTGCCGGTCGTGGCTGGGAATGGGTTGCCCTCGCCTACC
TGCTCGGCGGCGTGTGGCTGATTCAGCAGCGCGTCATTACCTGGCACATGCCAACCGCCTTCATCGCTGGCATGGTCGTC
ATCTCAGGCGCTCTCTGGCTCTGGCAACCGGCCACTTATGCCAGCCCACTGTTCCACCTGCTCAGTGGCGGCAGCATGCT
CGGTGCCTTCTTCATCGTCACCGACCCGGTTACCGGCGCGACAACGCCGCGCGGCAAGCTACTCTTCGCCGCCGGTATCG
GCCTGCTCGCCTACCTGATCCGTGTCTTCGGCGGCTATCCCGATGGCGTTGCATTCGCCGTACTGCTTTTCAATATCTGC
GTACCGTTGATCGACATGTACACCCAGCCTCCCGTATTCGGCATGAAGGACCAGTGA

Upstream 100 bases:

>100_bases
GCCCCCTGCTGTCGAGCAGGACATTGCCGAAATCGATGCGCGCCAGAACCAGGCCGTTATGGCCAATGCAGCCCCGGACG
GCGAGAAGAACAGCTAAATC

Downstream 100 bases:

>100_bases
CATGGTGACGTTCAAGGAACCCACTGCCACTGGCATGGCCACGCGCACGTCGGTCATTCTGGTACTGTTCGTCGCCGCTT
TTACTGCCGCCTTGGCGATT

Product: electron transport complex, RnfABCDGE type, D subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MEFNTSPYLLKEASVQRVMLKVLLALLPGIAAYVWLFGPAILIHLALTTITALVGEALMLKVRRRPLGLFLPDLSAVVTA
WLITLTFPPLVPWWLTVTATLFAIVIAKQLYGGLGQNPFNPAMIAFAVSIVSFPALMSQWPGTEGHFSSQLQVIFGLAPR
LDGLTSATPLDAMKTALMLAGDSHSTSVSSILANPEVFGLVAGRGWEWVALAYLLGGVWLIQQRVITWHMPTAFIAGMVV
ISGALWLWQPATYASPLFHLLSGGSMLGAFFIVTDPVTGATTPRGKLLFAAGIGLLAYLIRVFGGYPDGVAFAVLLFNIC
VPLIDMYTQPPVFGMKDQ

Sequences:

>Translated_338_residues
MEFNTSPYLLKEASVQRVMLKVLLALLPGIAAYVWLFGPAILIHLALTTITALVGEALMLKVRRRPLGLFLPDLSAVVTA
WLITLTFPPLVPWWLTVTATLFAIVIAKQLYGGLGQNPFNPAMIAFAVSIVSFPALMSQWPGTEGHFSSQLQVIFGLAPR
LDGLTSATPLDAMKTALMLAGDSHSTSVSSILANPEVFGLVAGRGWEWVALAYLLGGVWLIQQRVITWHMPTAFIAGMVV
ISGALWLWQPATYASPLFHLLSGGSMLGAFFIVTDPVTGATTPRGKLLFAAGIGLLAYLIRVFGGYPDGVAFAVLLFNIC
VPLIDMYTQPPVFGMKDQ
>Mature_338_residues
MEFNTSPYLLKEASVQRVMLKVLLALLPGIAAYVWLFGPAILIHLALTTITALVGEALMLKVRRRPLGLFLPDLSAVVTA
WLITLTFPPLVPWWLTVTATLFAIVIAKQLYGGLGQNPFNPAMIAFAVSIVSFPALMSQWPGTEGHFSSQLQVIFGLAPR
LDGLTSATPLDAMKTALMLAGDSHSTSVSSILANPEVFGLVAGRGWEWVALAYLLGGVWLIQQRVITWHMPTAFIAGMVV
ISGALWLWQPATYASPLFHLLSGGSMLGAFFIVTDPVTGATTPRGKLLFAAGIGLLAYLIRVFGGYPDGVAFAVLLFNIC
VPLIDMYTQPPVFGMKDQ

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=354, Percent_Identity=49.4350282485876, Blast_Score=322, Evalue=3e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 36429; Mature: 36429

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFNTSPYLLKEASVQRVMLKVLLALLPGIAAYVWLFGPAILIHLALTTITALVGEALML
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVRRRPLGLFLPDLSAVVTAWLITLTFPPLVPWWLTVTATLFAIVIAKQLYGGLGQNPFN
HHHHCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PAMIAFAVSIVSFPALMSQWPGTEGHFSSQLQVIFGLAPRLDGLTSATPLDAMKTALMLA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC
GDSHSTSVSSILANPEVFGLVAGRGWEWVALAYLLGGVWLIQQRVITWHMPTAFIAGMVV
CCCCCHHHHHHHCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHH
ISGALWLWQPATYASPLFHLLSGGSMLGAFFIVTDPVTGATTPRGKLLFAAGIGLLAYLI
HHCHHHHCCCHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
RVFGGYPDGVAFAVLLFNICVPLIDMYTQPPVFGMKDQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MEFNTSPYLLKEASVQRVMLKVLLALLPGIAAYVWLFGPAILIHLALTTITALVGEALML
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KVRRRPLGLFLPDLSAVVTAWLITLTFPPLVPWWLTVTATLFAIVIAKQLYGGLGQNPFN
HHHHCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PAMIAFAVSIVSFPALMSQWPGTEGHFSSQLQVIFGLAPRLDGLTSATPLDAMKTALMLA
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC
GDSHSTSVSSILANPEVFGLVAGRGWEWVALAYLLGGVWLIQQRVITWHMPTAFIAGMVV
CCCCCHHHHHHHCCCHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHH
ISGALWLWQPATYASPLFHLLSGGSMLGAFFIVTDPVTGATTPRGKLLFAAGIGLLAYLI
HHCHHHHCCCHHHHHHHHHHHCCCHHHEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
RVFGGYPDGVAFAVLLFNICVPLIDMYTQPPVFGMKDQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA