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The map label for this gene is rnfE [H]

Identifier: 71906797

GI number: 71906797

Start: 1262928

End: 1263620

Strand: Reverse

Name: rnfE [H]

Synonym: Daro_1158

Alternate gene names: 71906797

Gene position: 1263620-1262928 (Counterclockwise)

Preceding gene: 71906798

Following gene: 71906796

Centisome position: 28.07

GC content: 60.89

Gene sequence:

>693_bases
ATGTTGATCACGCTCAGCGAAATCAAGCAGATTTCCCTCAACGGAGTCTGGAAGCAGAACAGCAGCCTGGTCCAGATTCT
CGGCATGTGTCCGCTGCTGGCCATTACGACCACGCTGGTCAATGGCGTCATGCTGTCCTTCGCCACGCTGCTGGTCATGG
CCTTCTCCAATTTCTTCGTCGCCTGCCTGCGCAATTTCATTCCCTACGAAATTCGCATCCCGGTGTTCATCCTTGTCGCT
GCAGCCGTCGTCACCGTCATCGACCTCGGCATGAACGCCTACATGCACGACCTGTACTTGATCCTCGGCATCTTCATTCC
GCTGATCATCACCAATTGCCTGGTGCTGGGTCGCATCGAAGCCTTTGCCGCCAAAAACAGCCCGCTCGGCTCGGCCCTTG
ACGGCGCGATGATGGGCGTTGGCATGATCTGGACCCTGGGCCTGCTCGGCGGTATCCGCGAGTTCATCGGAGCTGGCACC
GTGCTCGGTGGTATCGAGCTGGTCATTCCCGGCACCTCGGCACTGCAGATCCTGCCGGCCGACTACCCGGGTTTCCTGGT
CGCCATTCTTCCCCCCGGCGCCTTTATCTGCCTGGGTTGCCTGGTTGCCTGGAAGAATTGGGTTGAAGCCCGCGCCGCCC
AGCGAGCCCAGTTGCCTCCCCCCGCCCCCGTTGCTGCCGGCGGCTGCCACTAA

Upstream 100 bases:

>100_bases
ACGCCGCGCGCCGTGACCAAGGCCGTGTACAAAGCCGTAAAGTTCGCCACCGAAAACCGCGAACGCCTGTTCGCGCCGAA
GAGCGCCAAGGAGTAGAGCC

Downstream 100 bases:

>100_bases
TCACCCAGCGCAGCCCATTGCGGGCCTGAGGAAAACGCCCGCATGCGACTCGAAACCATCCGCCAATCCATGCGAGCCAC
CGGCGCCAAGGATTGCCACA

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MLITLSEIKQISLNGVWKQNSSLVQILGMCPLLAITTTLVNGVMLSFATLLVMAFSNFFVACLRNFIPYEIRIPVFILVA
AAVVTVIDLGMNAYMHDLYLILGIFIPLIITNCLVLGRIEAFAAKNSPLGSALDGAMMGVGMIWTLGLLGGIREFIGAGT
VLGGIELVIPGTSALQILPADYPGFLVAILPPGAFICLGCLVAWKNWVEARAAQRAQLPPPAPVAAGGCH

Sequences:

>Translated_230_residues
MLITLSEIKQISLNGVWKQNSSLVQILGMCPLLAITTTLVNGVMLSFATLLVMAFSNFFVACLRNFIPYEIRIPVFILVA
AAVVTVIDLGMNAYMHDLYLILGIFIPLIITNCLVLGRIEAFAAKNSPLGSALDGAMMGVGMIWTLGLLGGIREFIGAGT
VLGGIELVIPGTSALQILPADYPGFLVAILPPGAFICLGCLVAWKNWVEARAAQRAQLPPPAPVAAGGCH
>Mature_230_residues
MLITLSEIKQISLNGVWKQNSSLVQILGMCPLLAITTTLVNGVMLSFATLLVMAFSNFFVACLRNFIPYEIRIPVFILVA
AAVVTVIDLGMNAYMHDLYLILGIFIPLIITNCLVLGRIEAFAAKNSPLGSALDGAMMGVGMIWTLGLLGGIREFIGAGT
VLGGIELVIPGTSALQILPADYPGFLVAILPPGAFICLGCLVAWKNWVEARAAQRAQLPPPAPVAAGGCH

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=213, Percent_Identity=46.4788732394366, Blast_Score=176, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24351; Mature: 24351

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLITLSEIKQISLNGVWKQNSSLVQILGMCPLLAITTTLVNGVMLSFATLLVMAFSNFFV
CEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACLRNFIPYEIRIPVFILVAAAVVTVIDLGMNAYMHDLYLILGIFIPLIITNCLVLGRIE
HHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFAAKNSPLGSALDGAMMGVGMIWTLGLLGGIREFIGAGTVLGGIELVIPGTSALQILPA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCEEEEECC
DYPGFLVAILPPGAFICLGCLVAWKNWVEARAAQRAQLPPPAPVAAGGCH
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLITLSEIKQISLNGVWKQNSSLVQILGMCPLLAITTTLVNGVMLSFATLLVMAFSNFFV
CEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ACLRNFIPYEIRIPVFILVAAAVVTVIDLGMNAYMHDLYLILGIFIPLIITNCLVLGRIE
HHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFAAKNSPLGSALDGAMMGVGMIWTLGLLGGIREFIGAGTVLGGIELVIPGTSALQILPA
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCEEEEECC
DYPGFLVAILPPGAFICLGCLVAWKNWVEARAAQRAQLPPPAPVAAGGCH
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA