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The map label for this gene is yjdF [H]

Identifier: 71906551

GI number: 71906551

Start: 987948

End: 988565

Strand: Reverse

Name: yjdF [H]

Synonym: Daro_0912

Alternate gene names: 71906551

Gene position: 988565-987948 (Counterclockwise)

Preceding gene: 71906552

Following gene: 71906537

Centisome position: 21.96

GC content: 63.59

Gene sequence:

>618_bases
ATGGAACAACGCGACAAGCTCAACGCCACGCTGGCCGCCATTGTGATCGCGGCGCTGGTCGTGTCGGGTATTGCCCCCTA
CGAGCGGCTGACCTGGGTCATGGAAGTCGCCCCGGTATTGATTGCCCTGCCGCTGATGATAGTCACACGCCGAAGCTACC
CGCTGACGACACTGCTCACCGTGCTGATTGCTGCCCACGCGCTGGTGCTGATCGCCGGCGGCGCCTACACCTATGCCCGC
GTGCCGCTCGGCTTCTGGATGCAGGATGTGCTCGGCACGGTGCGCAATCCGTATGACAAGCTCGGCCACTTCATGCAGGG
CTTCGTTCCGGCCATGGTCGCCCGCGAAATCCTGATCCGGGGCGCCTACGTCCGGGGCCGCAAGATGACTGGTTTCCTCT
GCATCTGCATCGCCATGGCGATCAGCGCCGTCTACGAACTGATCGAATGGGGTGCCGCGCTCTACCTCGGCCAGGGGGCC
GATGAATTCCTCGGCACGCAGGGCGACCAGTGGGATACTCAATCGGACATGTTCATGGCCCTGATTGGATCGAGCACCGC
GATGCTGTTGCTCTCCCGCTGGCACGACAAGCTGCTGGCCAGGCTGCGTTCGGCCTAG

Upstream 100 bases:

>100_bases
GTCAGTCATGGCTTGCTGGCCGGCATTACCGGCATGGGCAGCGCCAAGATCGAACATTACGGGGCAGAATTGCTTGAATT
GATTCGTAACGAGGGCTGAC

Downstream 100 bases:

>100_bases
GCAAATCACACGATCCGGCGAACACAAAAAAATGGCCGCACAAGGCGGCCGAAGTACACCAGAGGAAAGTTGCTGACTTA
GTGGGTCAGGAAATCCAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MEQRDKLNATLAAIVIAALVVSGIAPYERLTWVMEVAPVLIALPLMIVTRRSYPLTTLLTVLIAAHALVLIAGGAYTYAR
VPLGFWMQDVLGTVRNPYDKLGHFMQGFVPAMVAREILIRGAYVRGRKMTGFLCICIAMAISAVYELIEWGAALYLGQGA
DEFLGTQGDQWDTQSDMFMALIGSSTAMLLLSRWHDKLLARLRSA

Sequences:

>Translated_205_residues
MEQRDKLNATLAAIVIAALVVSGIAPYERLTWVMEVAPVLIALPLMIVTRRSYPLTTLLTVLIAAHALVLIAGGAYTYAR
VPLGFWMQDVLGTVRNPYDKLGHFMQGFVPAMVAREILIRGAYVRGRKMTGFLCICIAMAISAVYELIEWGAALYLGQGA
DEFLGTQGDQWDTQSDMFMALIGSSTAMLLLSRWHDKLLARLRSA
>Mature_205_residues
MEQRDKLNATLAAIVIAALVVSGIAPYERLTWVMEVAPVLIALPLMIVTRRSYPLTTLLTVLIAAHALVLIAGGAYTYAR
VPLGFWMQDVLGTVRNPYDKLGHFMQGFVPAMVAREILIRGAYVRGRKMTGFLCICIAMAISAVYELIEWGAALYLGQGA
DEFLGTQGDQWDTQSDMFMALIGSSTAMLLLSRWHDKLLARLRSA

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=184, Percent_Identity=63.0434782608696, Blast_Score=249, Evalue=1e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 22565; Mature: 22565

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQRDKLNATLAAIVIAALVVSGIAPYERLTWVMEVAPVLIALPLMIVTRRSYPLTTLLT
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VLIAAHALVLIAGGAYTYARVPLGFWMQDVLGTVRNPYDKLGHFMQGFVPAMVAREILIR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
GAYVRGRKMTGFLCICIAMAISAVYELIEWGAALYLGQGADEFLGTQGDQWDTQSDMFMA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHH
LIGSSTAMLLLSRWHDKLLARLRSA
HHHCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEQRDKLNATLAAIVIAALVVSGIAPYERLTWVMEVAPVLIALPLMIVTRRSYPLTTLLT
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VLIAAHALVLIAGGAYTYARVPLGFWMQDVLGTVRNPYDKLGHFMQGFVPAMVAREILIR
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
GAYVRGRKMTGFLCICIAMAISAVYELIEWGAALYLGQGADEFLGTQGDQWDTQSDMFMA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHH
LIGSSTAMLLLSRWHDKLLARLRSA
HHHCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]