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The map label for this gene is ycgR1

Identifier: 71906416

GI number: 71906416

Start: 844716

End: 845510

Strand: Reverse

Name: ycgR1

Synonym: Daro_0777

Alternate gene names: 71906416

Gene position: 845510-844716 (Counterclockwise)

Preceding gene: 71906417

Following gene: 71906412

Centisome position: 18.78

GC content: 54.34

Gene sequence:

>795_bases
ATGTCCTCCACCCAAGAAGATCAGCCTAACCCGGATTTCGAGATTGACCATCCGGAAGCATATTCCCAATATTTCCTGAC
CGCCCCGAGGGAGATTTCTTTCTATCTCAATCTTCTGGTCAAACGCGGCAGCCTGCTTACGGCGCATATCGACGACGGGA
AAGCGTTCTTCCTGACCACCATGATTGCGGTCGATGATGAAAAACAGGCTATTTTTCTGGATTCAGCGCAAGCGGATGAA
CTCAACACCGCTGCCAAAAATGCTCACCGCATTACCCTGACAGCCAAACTAGACCGCGTCAAGATTCAACTCCGCCTCCC
GCCCCTGAGACACCAACTCGTTGACGGACAAAAAATGCTGGTCGCGGCCTTCCCTCAGGCAATCCTGCGCATTCAGCGAC
GGGAGTTTTTCCGTTTAGAGTCGTCATCAGCCCATCCTATCCTTTGTCGGATTGCCATGGAGGCCCCGGAAGGCACACTG
AAGACATTTGAATGGAATGTGGCCGACATCAGCGGCGGCGGGCTCAGCCTGAATGCTCCAACCAGCCTGATTAACGACTG
CCAACGCGATGCACTGTTCAAGAACAGTCGGCTGGATATTCCCGGCGAGGGCGTCTTGCTGGTCAATCTGCGCGTCCGGA
AAACATCGGAGTTTTCTGCCGAAAACGGACAACATTACCTGCGGGTTGGCTGTGAATTCGTAGAACTACCGGGTTCCCGG
CTGGCAATGATCGAACGCTACATCGCCCGCATCGAACGCGAGCGCAAGGCCCGCGACTCTGGACTAGCGAATTAA

Upstream 100 bases:

>100_bases
ATGGCGGCACCGCAACATAACCACCGCACTAAGCTTCTTCTGGCCACAGTAGCCCCCCCAATGGATTACCATGATCGGGT
TAGCATATTGATAGCCTCGA

Downstream 100 bases:

>100_bases
ATCTGCATATTCATCACGTCCTGATAGGCCGTGACGAGTTTGTTGCGCACCTGAACCATCTCCTGGAAGGACACGCTTGC
TGTCTGCAAAGCAATCATGA

Product: YcgR

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR 1

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MSSTQEDQPNPDFEIDHPEAYSQYFLTAPREISFYLNLLVKRGSLLTAHIDDGKAFFLTTMIAVDDEKQAIFLDSAQADE
LNTAAKNAHRITLTAKLDRVKIQLRLPPLRHQLVDGQKMLVAAFPQAILRIQRREFFRLESSSAHPILCRIAMEAPEGTL
KTFEWNVADISGGGLSLNAPTSLINDCQRDALFKNSRLDIPGEGVLLVNLRVRKTSEFSAENGQHYLRVGCEFVELPGSR
LAMIERYIARIERERKARDSGLAN

Sequences:

>Translated_264_residues
MSSTQEDQPNPDFEIDHPEAYSQYFLTAPREISFYLNLLVKRGSLLTAHIDDGKAFFLTTMIAVDDEKQAIFLDSAQADE
LNTAAKNAHRITLTAKLDRVKIQLRLPPLRHQLVDGQKMLVAAFPQAILRIQRREFFRLESSSAHPILCRIAMEAPEGTL
KTFEWNVADISGGGLSLNAPTSLINDCQRDALFKNSRLDIPGEGVLLVNLRVRKTSEFSAENGQHYLRVGCEFVELPGSR
LAMIERYIARIERERKARDSGLAN
>Mature_263_residues
SSTQEDQPNPDFEIDHPEAYSQYFLTAPREISFYLNLLVKRGSLLTAHIDDGKAFFLTTMIAVDDEKQAIFLDSAQADEL
NTAAKNAHRITLTAKLDRVKIQLRLPPLRHQLVDGQKMLVAAFPQAILRIQRREFFRLESSSAHPILCRIAMEAPEGTLK
TFEWNVADISGGGLSLNAPTSLINDCQRDALFKNSRLDIPGEGVLLVNLRVRKTSEFSAENGQHYLRVGCEFVELPGSRL
AMIERYIARIERERKARDSGLAN

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCGR1_DECAR (Q47HZ8)

Other databases:

- EMBL:   CP000089
- RefSeq:   YP_284003.1
- ProteinModelPortal:   Q47HZ8
- STRING:   Q47HZ8
- GeneID:   3569276
- GenomeReviews:   CP000089_GR
- KEGG:   dar:Daro_0777
- NMPDR:   fig|159087.4.peg.1033
- eggNOG:   NOG41419
- OMA:   TAPREIS
- ProtClustDB:   CLSK2525743
- BioCyc:   DARO159087:DARO_0777-MONOMER
- HAMAP:   MF_01457
- InterPro:   IPR009875
- InterPro:   IPR009926

Pfam domain/function: PF07238 PilZ; PF07317 YcgR

EC number: NA

Molecular weight: Translated: 29739; Mature: 29608

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTQEDQPNPDFEIDHPEAYSQYFLTAPREISFYLNLLVKRGSLLTAHIDDGKAFFLTT
CCCCCCCCCCCCEECCCCHHHHHHEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE
MIAVDDEKQAIFLDSAQADELNTAAKNAHRITLTAKLDRVKIQLRLPPLRHQLVDGQKML
EEEECCCCCEEEEECCCCCHHHHHHCCCEEEEEEEEEEEEEEEEECCHHHHHHCCCCHHH
VAAFPQAILRIQRREFFRLESSSAHPILCRIAMEAPEGTLKTFEWNVADISGGGLSLNAP
HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCEEECCC
TSLINDCQRDALFKNSRLDIPGEGVLLVNLRVRKTSEFSAENGQHYLRVGCEFVELPGSR
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCEEEECCCHH
LAMIERYIARIERERKARDSGLAN
HHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSTQEDQPNPDFEIDHPEAYSQYFLTAPREISFYLNLLVKRGSLLTAHIDDGKAFFLTT
CCCCCCCCCCCEECCCCHHHHHHEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE
MIAVDDEKQAIFLDSAQADELNTAAKNAHRITLTAKLDRVKIQLRLPPLRHQLVDGQKML
EEEECCCCCEEEEECCCCCHHHHHHCCCEEEEEEEEEEEEEEEEECCHHHHHHCCCCHHH
VAAFPQAILRIQRREFFRLESSSAHPILCRIAMEAPEGTLKTFEWNVADISGGGLSLNAP
HHHHHHHHHHHHHHHHHEECCCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCEEECCC
TSLINDCQRDALFKNSRLDIPGEGVLLVNLRVRKTSEFSAENGQHYLRVGCEFVELPGSR
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEECCEEEECCCHH
LAMIERYIARIERERKARDSGLAN
HHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA