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The map label for this gene is cph2 [H]

Identifier: 71906348

GI number: 71906348

Start: 778723

End: 779691

Strand: Reverse

Name: cph2 [H]

Synonym: Daro_0709

Alternate gene names: 71906348

Gene position: 779691-778723 (Counterclockwise)

Preceding gene: 71906360

Following gene: 71906347

Centisome position: 17.32

GC content: 59.03

Gene sequence:

>969_bases
ATGTTCGATCAGCCAGCATCTGGCAAAAACAGGCCGACCGTGCTCGTCATCGCCCCTTCTGCCGCGAATCGGGGGCAGAT
TTGCGAGTGCCTTCATCAGTTGCCGGATATCCGGACGGTCGCCACCGGGGAGGGCGAGCAGGCCCTGAAGATTATTCAGG
AAACCTGGCCCAGCATGGTTTTGCTGGACGATGCGCTGCAGGGTATCGATGGCATTTCGCTGACCCGGACCATCCGCACT
TGGGAGCAATCAAGAGACGAAGCCGGCTTTTCGCCATGGACGCCTATCGTCCTGCTCTCTTCGGTCAATGATGAAGACAT
TCTGGCCAAAGGCATCCTGGCCGGCGCCGACGACTTCCTTTACAAACCCGTCTCGGAAGTTGTCCTGCTGGCCAAGGTCA
GGGCCATGCTCCGCATCGCAACCAGACAGCAGGAAATCTGCGCGGTGCACCGGCAGCTCAAGGAAATCGCCATTCTGGAC
AGCCTGACCGGCATCCCGAATCGCCGGCACTTTGATGACACTCTGGCCGCCGAATGGAAACGCTGCATTCGGACCGAAAC
GCCACTCAGCATCGTTATCAGCGACGTCGACTTTTTCAAACAATTCAACGACATATACGGCCACCAAGCCGGCGATGTCT
GCCTCAAAGCTGTCGCCAGCTCACTCAGTGAATCCCTCTTCAGGGTTGAAGATACCGTGGCGCGTTACGGTGGCGAAGAG
TTTGTTGCCATCCTGCCCGGCACCGATGCCAATGGCGCCTACGCCGTTGCCGAACGCATGCGCCAGTCCGCCCGCGACCT
CTGCATCCCCCATGAGCGCGGTATCGACGGGCGCATTTCCTGCAGCTTTGGCGTCGCCAGCACATGCCCCAGTGCAGACA
AGGCACCACAGCAATTGCTCAGAACTGCGGATGCCGGTCTGTATGCAGCCAAACGCGCCGGCAGAAACCGTGTGGCATTC
AAGCAGTAA

Upstream 100 bases:

>100_bases
AAAAACGACATATTACTCCCGGATTCAGCAAAGGAAAAAGCCCCTGTTTCATAGTGGTGCTATGATGAAAAAATAGATCA
GCCATCAAAGCGCTCCCACC

Downstream 100 bases:

>100_bases
CCCGCTCCCTTTTTACGCGGCGGATCGAGCACTCCGTCAGCGACGCGGTAATCCGTCAGCCTGACTGCGGCCCAGGAGCC
ACTGAAACGGACAAGCTAGC

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MFDQPASGKNRPTVLVIAPSAANRGQICECLHQLPDIRTVATGEGEQALKIIQETWPSMVLLDDALQGIDGISLTRTIRT
WEQSRDEAGFSPWTPIVLLSSVNDEDILAKGILAGADDFLYKPVSEVVLLAKVRAMLRIATRQQEICAVHRQLKEIAILD
SLTGIPNRRHFDDTLAAEWKRCIRTETPLSIVISDVDFFKQFNDIYGHQAGDVCLKAVASSLSESLFRVEDTVARYGGEE
FVAILPGTDANGAYAVAERMRQSARDLCIPHERGIDGRISCSFGVASTCPSADKAPQQLLRTADAGLYAAKRAGRNRVAF
KQ

Sequences:

>Translated_322_residues
MFDQPASGKNRPTVLVIAPSAANRGQICECLHQLPDIRTVATGEGEQALKIIQETWPSMVLLDDALQGIDGISLTRTIRT
WEQSRDEAGFSPWTPIVLLSSVNDEDILAKGILAGADDFLYKPVSEVVLLAKVRAMLRIATRQQEICAVHRQLKEIAILD
SLTGIPNRRHFDDTLAAEWKRCIRTETPLSIVISDVDFFKQFNDIYGHQAGDVCLKAVASSLSESLFRVEDTVARYGGEE
FVAILPGTDANGAYAVAERMRQSARDLCIPHERGIDGRISCSFGVASTCPSADKAPQQLLRTADAGLYAAKRAGRNRVAF
KQ
>Mature_322_residues
MFDQPASGKNRPTVLVIAPSAANRGQICECLHQLPDIRTVATGEGEQALKIIQETWPSMVLLDDALQGIDGISLTRTIRT
WEQSRDEAGFSPWTPIVLLSSVNDEDILAKGILAGADDFLYKPVSEVVLLAKVRAMLRIATRQQEICAVHRQLKEIAILD
SLTGIPNRRHFDDTLAAEWKRCIRTETPLSIVISDVDFFKQFNDIYGHQAGDVCLKAVASSLSESLFRVEDTVARYGGEE
FVAILPGTDANGAYAVAERMRQSARDLCIPHERGIDGRISCSFGVASTCPSADKAPQQLLRTADAGLYAAKRAGRNRVAF
KQ

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=36.5269461077844, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI145693134, Length=192, Percent_Identity=35.9375, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=41.5094339622642, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787262, Length=178, Percent_Identity=36.5168539325843, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=36.8131868131868, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=34.7560975609756, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=34.5238095238095, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787541, Length=165, Percent_Identity=32.1212121212121, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=181, Percent_Identity=27.0718232044199, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786599, Length=125, Percent_Identity=29.6, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=28.3132530120482, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081974, Length=198, Percent_Identity=25.2525252525253, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787056, Length=167, Percent_Identity=30.5389221556886, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 35311; Mature: 35311

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDQPASGKNRPTVLVIAPSAANRGQICECLHQLPDIRTVATGEGEQALKIIQETWPSMV
CCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHH
LLDDALQGIDGISLTRTIRTWEQSRDEAGFSPWTPIVLLSSVNDEDILAKGILAGADDFL
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHH
YKPVSEVVLLAKVRAMLRIATRQQEICAVHRQLKEIAILDSLTGIPNRRHFDDTLAAEWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
RCIRTETPLSIVISDVDFFKQFNDIYGHQAGDVCLKAVASSLSESLFRVEDTVARYGGEE
HHHCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FVAILPGTDANGAYAVAERMRQSARDLCIPHERGIDGRISCSFGVASTCPSADKAPQQLL
EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHH
RTADAGLYAAKRAGRNRVAFKQ
HHHCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFDQPASGKNRPTVLVIAPSAANRGQICECLHQLPDIRTVATGEGEQALKIIQETWPSMV
CCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCHH
LLDDALQGIDGISLTRTIRTWEQSRDEAGFSPWTPIVLLSSVNDEDILAKGILAGADDFL
HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCHHHH
YKPVSEVVLLAKVRAMLRIATRQQEICAVHRQLKEIAILDSLTGIPNRRHFDDTLAAEWK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
RCIRTETPLSIVISDVDFFKQFNDIYGHQAGDVCLKAVASSLSESLFRVEDTVARYGGEE
HHHCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FVAILPGTDANGAYAVAERMRQSARDLCIPHERGIDGRISCSFGVASTCPSADKAPQQLL
EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHH
RTADAGLYAAKRAGRNRVAFKQ
HHHCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]