Definition Dechloromonas aromatica RCB, complete genome.
Accession NC_007298
Length 4,501,104

Click here to switch to the map view.

The map label for this gene is 71905883

Identifier: 71905883

GI number: 71905883

Start: 271675

End: 272505

Strand: Reverse

Name: 71905883

Synonym: Daro_0241

Alternate gene names: NA

Gene position: 272505-271675 (Counterclockwise)

Preceding gene: 71905884

Following gene: 71905882

Centisome position: 6.05

GC content: 58.97

Gene sequence:

>831_bases
GTGCGCACACCCAGCCATCTATTAAAAATAGCAAGCCTGCTCATCGCAGTGCTTATCGGCAGCGCGAGTCATGCTGCCGG
CGCCTACAGCTTCGCGGTCGTTCCACAATTTGACCAGCGCAAGCTTTTCGCCACTTGGAAACCGATCGTCGACAACATCA
GCAAGCGAACCGGCATTCAGCTCAATCTGGTGGCCACCCTGACCGTTCCTGAATTCGAACGCGAACTCTCCAAGGGCAGT
TTCGATTTCGTCTATGCCAACCCCTACCATATCCTGCGCGAAGAAGACCGCCAGGGCTACGTTCCGCTGATTCGCGACAA
GACCCCGCTGCGTGGCATCCTGGTCGTAGCCAAGGATAGCCCGCTCAAATCTCCGGCCGATCTGGATGGCCAGCAAATGG
CGATTCCATCGTTCAACGCCCTTGGCGCCAGCCTGTTGCTGCGGGCCGATCTCGCTCAGATATTCAAGATCAAGGTCACG
CCGGTCAATGTCAAAACCCACAGCTCGGTCTACCTGTATGTCGCCAACGGCTTGATACCCGCCGGTGGCGGGGTCGAAAA
GACCTTCCAGGAACAGGAACCTGCCGTCCGCGATCTGTTGCGGGTGCTGTACACCACCCGCGAAATGCCATCCCATCCCA
TCGCCGCCCACCCACGTGTACCTGCCAAGGTTCAAGCCGCCATCAAGCAAGCCTTCCTTGAACTGGCCGCCACTGACGAG
GGCCGCCGACTACTGCAGGAAATTCCGATGACCGATGCGGTCGCCGCATCGATGAAGGATTACGCGCCGATGCGCGCCTG
GGGGCTGGCAAGCTACTGGGTCGATCCGTAA

Upstream 100 bases:

>100_bases
CAAGGGATGAAATAGCCATTTCCTGCAAATATCCTTAGTACTTGCAGGGCCTTTTGGCGCATACTTTTAAACGCCAAAAT
CACAAATAGTGAGGCAACCT

Downstream 100 bases:

>100_bases
CGTCATGGGCCTGCGCCAGAAATTCCTGCTGCCGCTGTTCCTGATCAGCCTGCTGGTTGGCGGCCTGCTGCATTTTGTCT
GGATTCCGGCGTCGATCCGC

Product: periplasmic binding protein-related protein

Products: NA

Alternate protein names: Phosphate/Phosphonate ABC Transporter Periplasmic Protein; ABC Transport System Periplasmic Component

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQLNLVATLTVPEFERELSKGS
FDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDSPLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVT
PVNVKTHSSVYLYVANGLIPAGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE
GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP

Sequences:

>Translated_276_residues
MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQLNLVATLTVPEFERELSKGS
FDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDSPLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVT
PVNVKTHSSVYLYVANGLIPAGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE
GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP
>Mature_276_residues
MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQLNLVATLTVPEFERELSKGS
FDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDSPLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVT
PVNVKTHSSVYLYVANGLIPAGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE
GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP

Specific function: Unknown

COG id: COG3221

COG function: function code P; ABC-type phosphate/phosphonate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30384; Mature: 30384

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEE
LNLVATLTVPEFERELSKGSFDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDS
EEEEEEEECCHHHHHHCCCCEEEEEECCHHEEECCCCCCCCCEECCCCCCCEEEEEECCC
PLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVTPVNVKTHSSVYLYVANGLIP
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCEEEEEEECCEEE
AGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE
CCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP
HHHHHHHCCCHHHHHHHHHHCCCHHHHCCHHHCCCC
>Mature Secondary Structure
MRTPSHLLKIASLLIAVLIGSASHAAGAYSFAVVPQFDQRKLFATWKPIVDNISKRTGIQ
CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEE
LNLVATLTVPEFERELSKGSFDFVYANPYHILREEDRQGYVPLIRDKTPLRGILVVAKDS
EEEEEEEECCHHHHHHCCCCEEEEEECCHHEEECCCCCCCCCEECCCCCCCEEEEEECCC
PLKSPADLDGQQMAIPSFNALGASLLLRADLAQIFKIKVTPVNVKTHSSVYLYVANGLIP
CCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCEEEEEEECCEEE
AGGGVEKTFQEQEPAVRDLLRVLYTTREMPSHPIAAHPRVPAKVQAAIKQAFLELAATDE
CCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH
GRRLLQEIPMTDAVAASMKDYAPMRAWGLASYWVDP
HHHHHHHCCCHHHHHHHHHHCCCHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA