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The map label for this gene is hslR [H]

Identifier: 71905848

GI number: 71905848

Start: 222110

End: 222478

Strand: Reverse

Name: hslR [H]

Synonym: Daro_0206

Alternate gene names: 71905848

Gene position: 222478-222110 (Counterclockwise)

Preceding gene: 71905849

Following gene: 71905830

Centisome position: 4.94

GC content: 62.33

Gene sequence:

>369_bases
TTGCGCGTCGATAAATGGCTGTGGGCAGCGCGATTCTTCAAGACGCGCTCCCTGGCCAGCGATGCCGTCAGTGGCGGCAA
GGTGAAGGTCAATGGCGCTACGATCAAACCAGCCCGCGACATCAAGATCGGTGACCGACTCAACATCATTAACAGTGAAA
CGCGCTGGGAAGTGACCGTCCAAGCCCCGTCGGACAAGCGCGGCCCGGCACCGGAAGCCCGCCTGCTCTACGAGGAAACA
CCCGAAAGCATCGCTGCCCGTGAAGCCGCGAGAGATAGCCGACAGTTCGTGCAAGATCCAGCAGCGGACATCCACGGCCG
ACCGACCAAGCGCGACCGCCGCCAGCTTGGCCGCTTCAGCGGCTCATAA

Upstream 100 bases:

>100_bases
TTGAAGTGATGGTCGATGGCGACAAGATTCACGTCATCCGCCAGCGTGAAACCGTCGAACAGCTGTACGCCGGTGAGTCC
ATCCTGCCGCAGTGAACGGT

Downstream 100 bases:

>100_bases
CACCCAGACCAGCGCCAGCGGAAGGTAGACCAGCGCCGCCAAATTGCCGATCAGCACAATCGAGGCAACGCGTTGCGGCT
CCTGCTTGTAGCGCTCGGCA

Product: RNA-binding S4

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MRVDKWLWAARFFKTRSLASDAVSGGKVKVNGATIKPARDIKIGDRLNIINSETRWEVTVQAPSDKRGPAPEARLLYEET
PESIAAREAARDSRQFVQDPAADIHGRPTKRDRRQLGRFSGS

Sequences:

>Translated_122_residues
MRVDKWLWAARFFKTRSLASDAVSGGKVKVNGATIKPARDIKIGDRLNIINSETRWEVTVQAPSDKRGPAPEARLLYEET
PESIAAREAARDSRQFVQDPAADIHGRPTKRDRRQLGRFSGS
>Mature_122_residues
MRVDKWLWAARFFKTRSLASDAVSGGKVKVNGATIKPARDIKIGDRLNIINSETRWEVTVQAPSDKRGPAPEARLLYEET
PESIAAREAARDSRQFVQDPAADIHGRPTKRDRRQLGRFSGS

Specific function: May play a important role in binding of nucleic acid. More specific for RNA [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=119, Percent_Identity=42.8571428571429, Blast_Score=96, Evalue=7e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 13674; Mature: 13674

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVDKWLWAARFFKTRSLASDAVSGGKVKVNGATIKPARDIKIGDRLNIINSETRWEVTV
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCEEEEECCCCEEEEEE
QAPSDKRGPAPEARLLYEETPESIAAREAARDSRQFVQDPAADIHGRPTKRDRRQLGRFS
ECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
GS
CC
>Mature Secondary Structure
MRVDKWLWAARFFKTRSLASDAVSGGKVKVNGATIKPARDIKIGDRLNIINSETRWEVTV
CCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCEEEEECCCCEEEEEE
QAPSDKRGPAPEARLLYEETPESIAAREAARDSRQFVQDPAADIHGRPTKRDRRQLGRFS
ECCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC
GS
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]