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The map label for this gene is secD [H]

Identifier: 71892012

GI number: 71892012

Start: 268103

End: 269962

Strand: Direct

Name: secD [H]

Synonym: BPEN_238

Alternate gene names: 71892012

Gene position: 268103-269962 (Clockwise)

Preceding gene: 71892011

Following gene: 71892013

Centisome position: 33.87

GC content: 28.98

Gene sequence:

>1860_bases
GTGTTAAATAATTACCCGTTATGGAAGTATCTTACGGTTATCTTAGTATTTGTTACTGGTATAATCTACACATTACCGAG
TTTATATAGGGATTATCCTACAATATATATTGCTCAATGTGCTCTAGAACAAAACTATCAAGAGATGGATGATATTTTAT
TATGTCAAATAAAAAAAATACTAGCATACGAAAAAATAATTAATAAATCTATTGTATCGCAAGCAAATAAAATTCGAATA
CAATTTTTTCATGAACAGGATCAACTTCAAGCTTACCAAAAACTATCAACTATTTTTTCAAAGAAATATCAGATATTACT
TTGTAATACTCGAAACATACCACATTGGTTATCTGCAATAAAAGCTAAGCCTATAAAATTAGGATTAGATTTATGCGGTG
GAATATATTTTGTAATACATGCAAATACGAAAACTGTACTAGATAAATTCCAAGAACAATATATTAATTCTTTAAGAGTT
ATCTTATTTGAAAAAAACATTCCCTATTTACAAATATACAAAATTAAAAATAATGATATTGAAATTAATTTCAAAAATTC
TAATTATAGAAATAAAGCAATTTTACCTCTATCTAAAATAGATAATGAGCTAATATTGTATGCCATAGGAACAAACAAAT
TACATGTGATTTTTTCTGAAAGAAAAAAAAATGCAATTCGTGAGCACGCAATACATCAAAATTGTACTATTTTACATCAT
CGTATCCACCAGTTAGGTATTACTGAGCCATTAGTACAACGTCATGGAAGTGATCGTATTATTATAGAATTACCCGGTTT
TCAAGATATTGAAAAAATTAGAGAGATGCTTGGTACCACGGCAAGCCTGGAGTTTCGACTGGTTAATTCAACAATAAGTG
AATTTAAAATAAATAATAATTTAATTCCAGAAGATTCTGAGATAAAATTGAGCAATAATGGTTATTTAGTGCCGTTATAT
AAACAAATAGTGTTATCTGGAGACAACATTATTAATTCTAATGTTGGTTTAGATGAGTATAATCGACCTCAAGTGAATAT
TTCTTTAGATAAAACAGGTAGTATCTCAATTTCTAATTTTACCAAAAATAATATTGGCAAAGCAATAGCTACTTTATTCG
TAGAATACAAAGATAGCGGAAAAAAAGATTCTAAAGGACATGCTATTTTAATTAAACATGAAAAAGTTATTAACATTGCT
ACTATTCAATCTCAATTAAGTGATAATTTCCGTATTTCCGGAATCAACAATTTAAATGAAGCACGTCATCTTTCGTTATT
GTTACGTATGGGGAATTTAGCAGCACCTATTCATATTGAAGAAGAACGCATGATTGGTCCTACACTTGGCAAACAAAACA
TTGTACGGGGATTTATTGCATGTTCTTTAGGATTATTAACTTCTATATGCTTTATGATTTTATGGTATCATTACTTTGGA
TTAATCGCTAGTGTTGCTTTAATTGCTAATTTAATACTCATGATAAGTACGATGTCTATAGTCCCAGGAATAGTGTTAAC
TATGCCAAGTATAGTGGGCATAGTATTGACTTTATCCGTAGCTGTAGATGCAAATGTATTAATTAACGAAAGAATCAAAG
AAGAAATAAAAAAAGGTAAACCAGTACAATACGCTATATACACGGGATATCGTAAAGCGTTTACTAGTATTGTAGACGCA
AACATTACAACTATTATTACTTCTATTATACTATATTTAATCGGTACAGGACCAATTAAAGGATTCGCTATTACTACTAT
TATTGGAGTAGGCACATCAATGTTTACATCTATTGTTGGTACTCGTGCTGTTGTTAATTTAGTCTACGGGAAAAGACGTA
TTAATAAGCTATCCATTTAA

Upstream 100 bases:

>100_bases
GAAATATTGATTAAGCGTGACTGTATTACTGCTATTTTGCCTAAAGGCACTATGAAAGCATTATAATTTATAATTTCAAT
ATAGATTGAGATAAGATTTT

Downstream 100 bases:

>100_bases
CTTTTTACGTTTTTAGATCATATATACCGGTTTTATACATTTTAATTGAATTTTTTTTAAAATGAGTGAAAGTTATTATA
AAATTTATGATTTTCTTGCA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 619; Mature: 619

Protein sequence:

>619_residues
MLNNYPLWKYLTVILVFVTGIIYTLPSLYRDYPTIYIAQCALEQNYQEMDDILLCQIKKILAYEKIINKSIVSQANKIRI
QFFHEQDQLQAYQKLSTIFSKKYQILLCNTRNIPHWLSAIKAKPIKLGLDLCGGIYFVIHANTKTVLDKFQEQYINSLRV
ILFEKNIPYLQIYKIKNNDIEINFKNSNYRNKAILPLSKIDNELILYAIGTNKLHVIFSERKKNAIREHAIHQNCTILHH
RIHQLGITEPLVQRHGSDRIIIELPGFQDIEKIREMLGTTASLEFRLVNSTISEFKINNNLIPEDSEIKLSNNGYLVPLY
KQIVLSGDNIINSNVGLDEYNRPQVNISLDKTGSISISNFTKNNIGKAIATLFVEYKDSGKKDSKGHAILIKHEKVINIA
TIQSQLSDNFRISGINNLNEARHLSLLLRMGNLAAPIHIEEERMIGPTLGKQNIVRGFIACSLGLLTSICFMILWYHYFG
LIASVALIANLILMISTMSIVPGIVLTMPSIVGIVLTLSVAVDANVLINERIKEEIKKGKPVQYAIYTGYRKAFTSIVDA
NITTIITSIILYLIGTGPIKGFAITTIIGVGTSMFTSIVGTRAVVNLVYGKRRINKLSI

Sequences:

>Translated_619_residues
MLNNYPLWKYLTVILVFVTGIIYTLPSLYRDYPTIYIAQCALEQNYQEMDDILLCQIKKILAYEKIINKSIVSQANKIRI
QFFHEQDQLQAYQKLSTIFSKKYQILLCNTRNIPHWLSAIKAKPIKLGLDLCGGIYFVIHANTKTVLDKFQEQYINSLRV
ILFEKNIPYLQIYKIKNNDIEINFKNSNYRNKAILPLSKIDNELILYAIGTNKLHVIFSERKKNAIREHAIHQNCTILHH
RIHQLGITEPLVQRHGSDRIIIELPGFQDIEKIREMLGTTASLEFRLVNSTISEFKINNNLIPEDSEIKLSNNGYLVPLY
KQIVLSGDNIINSNVGLDEYNRPQVNISLDKTGSISISNFTKNNIGKAIATLFVEYKDSGKKDSKGHAILIKHEKVINIA
TIQSQLSDNFRISGINNLNEARHLSLLLRMGNLAAPIHIEEERMIGPTLGKQNIVRGFIACSLGLLTSICFMILWYHYFG
LIASVALIANLILMISTMSIVPGIVLTMPSIVGIVLTLSVAVDANVLINERIKEEIKKGKPVQYAIYTGYRKAFTSIVDA
NITTIITSIILYLIGTGPIKGFAITTIIGVGTSMFTSIVGTRAVVNLVYGKRRINKLSI
>Mature_619_residues
MLNNYPLWKYLTVILVFVTGIIYTLPSLYRDYPTIYIAQCALEQNYQEMDDILLCQIKKILAYEKIINKSIVSQANKIRI
QFFHEQDQLQAYQKLSTIFSKKYQILLCNTRNIPHWLSAIKAKPIKLGLDLCGGIYFVIHANTKTVLDKFQEQYINSLRV
ILFEKNIPYLQIYKIKNNDIEINFKNSNYRNKAILPLSKIDNELILYAIGTNKLHVIFSERKKNAIREHAIHQNCTILHH
RIHQLGITEPLVQRHGSDRIIIELPGFQDIEKIREMLGTTASLEFRLVNSTISEFKINNNLIPEDSEIKLSNNGYLVPLY
KQIVLSGDNIINSNVGLDEYNRPQVNISLDKTGSISISNFTKNNIGKAIATLFVEYKDSGKKDSKGHAILIKHEKVINIA
TIQSQLSDNFRISGINNLNEARHLSLLLRMGNLAAPIHIEEERMIGPTLGKQNIVRGFIACSLGLLTSICFMILWYHYFG
LIASVALIANLILMISTMSIVPGIVLTMPSIVGIVLTLSVAVDANVLINERIKEEIKKGKPVQYAIYTGYRKAFTSIVDA
NITTIITSIILYLIGTGPIKGFAITTIIGVGTSMFTSIVGTRAVVNLVYGKRRINKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=623, Percent_Identity=54.2536115569823, Blast_Score=676, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 69968; Mature: 69968

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS00761 SPASE_I_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNYPLWKYLTVILVFVTGIIYTLPSLYRDYPTIYIAQCALEQNYQEMDDILLCQIKKI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHH
LAYEKIINKSIVSQANKIRIQFFHEQDQLQAYQKLSTIFSKKYQILLCNTRNIPHWLSAI
HHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
KAKPIKLGLDLCGGIYFVIHANTKTVLDKFQEQYINSLRVILFEKNIPYLQIYKIKNNDI
CCCCCEECHHHCCCEEEEEECCHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEECCEE
EINFKNSNYRNKAILPLSKIDNELILYAIGTNKLHVIFSERKKNAIREHAIHQNCTILHH
EEEECCCCCCCCEEEEHHHCCCEEEEEEECCCEEEEEEEHHHHHHHHHHHHHCCHHHHHH
RIHQLGITEPLVQRHGSDRIIIELPGFQDIEKIREMLGTTASLEFRLVNSTISEFKINNN
HHHHCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHEEECCC
LIPEDSEIKLSNNGYLVPLYKQIVLSGDNIINSNVGLDEYNRPQVNISLDKTGSISISNF
CCCCCCCEEECCCCEEEEEHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEECC
TKNNIGKAIATLFVEYKDSGKKDSKGHAILIKHEKVINIATIQSQLSDNFRISGINNLNE
CHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECCCEEEHHHHHHHHCCCEEEECCCCCHH
ARHLSLLLRMGNLAAPIHIEEERMIGPTLGKQNIVRGFIACSLGLLTSICFMILWYHYFG
HHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIASVALIANLILMISTMSIVPGIVLTMPSIVGIVLTLSVAVDANVLINERIKEEIKKGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
PVQYAIYTGYRKAFTSIVDANITTIITSIILYLIGTGPIKGFAITTIIGVGTSMFTSIVG
CEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHH
TRAVVNLVYGKRRINKLSI
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLNNYPLWKYLTVILVFVTGIIYTLPSLYRDYPTIYIAQCALEQNYQEMDDILLCQIKKI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHH
LAYEKIINKSIVSQANKIRIQFFHEQDQLQAYQKLSTIFSKKYQILLCNTRNIPHWLSAI
HHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH
KAKPIKLGLDLCGGIYFVIHANTKTVLDKFQEQYINSLRVILFEKNIPYLQIYKIKNNDI
CCCCCEECHHHCCCEEEEEECCHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEECCEE
EINFKNSNYRNKAILPLSKIDNELILYAIGTNKLHVIFSERKKNAIREHAIHQNCTILHH
EEEECCCCCCCCEEEEHHHCCCEEEEEEECCCEEEEEEEHHHHHHHHHHHHHCCHHHHHH
RIHQLGITEPLVQRHGSDRIIIELPGFQDIEKIREMLGTTASLEFRLVNSTISEFKINNN
HHHHCCCCCHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHEEECCC
LIPEDSEIKLSNNGYLVPLYKQIVLSGDNIINSNVGLDEYNRPQVNISLDKTGSISISNF
CCCCCCCEEECCCCEEEEEHHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEEECC
TKNNIGKAIATLFVEYKDSGKKDSKGHAILIKHEKVINIATIQSQLSDNFRISGINNLNE
CHHHHHHHHHHHHHEECCCCCCCCCCCEEEEECCCEEEHHHHHHHHCCCEEEECCCCCHH
ARHLSLLLRMGNLAAPIHIEEERMIGPTLGKQNIVRGFIACSLGLLTSICFMILWYHYFG
HHHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIASVALIANLILMISTMSIVPGIVLTMPSIVGIVLTLSVAVDANVLINERIKEEIKKGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
PVQYAIYTGYRKAFTSIVDANITTIITSIILYLIGTGPIKGFAITTIIGVGTSMFTSIVG
CEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHH
TRAVVNLVYGKRRINKLSI
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]