Click here to switch to the map view.

The map label for this gene is scoP [H]

Identifier: 66767888

GI number: 66767888

Start: 1882655

End: 1883305

Strand: Reverse

Name: scoP [H]

Synonym: XC_1564

Alternate gene names: 66767888

Gene position: 1883305-1882655 (Counterclockwise)

Preceding gene: 66767898

Following gene: 66767887

Centisome position: 36.58

GC content: 67.28

Gene sequence:

>651_bases
ATGTTCAATCGCAATACCGGCATCGTGCTGCTGGTGGCGCTGGCCGCCGGGCTAGGCCTGTTGCTGGGCCAGAAGTTCCT
TGGCGGCACCCCGCGCTCGCCCTGGCCGCCCACCCAGACCATCACCTTCTACCCACAGCCGCGCCCGCTGCCGCAGTTCA
GCCTGCGCCAGTCAGATGGCACCCAGCTGGTGCCCGGCGAATTGAACGGTCATTGGACCCTAGTGTTCCTGGGCTTCACC
TTCTGCCCGGATGTCTGCCCCACCACACTGACCGATCTGGCGGTGGCCCAGCGGCAGTGGGAGAGTGTTCCCGAGAGCCT
GCGCCCGCGCGTGTTGTTCGTGTCGGTGGACCCGCAGCGCGACCCGCCCGCACGCCTGGGCGAATACGCGCACGCCTTCC
ACAAGGACACGCTGGCGGCCACGGCCGATGAACCGTCGCTGGAGCGCTTCGCCACCGCGCTGGGGTTCGTGTTCCAGAAA
GTGCCGGGCAAGAATTTCGCGCAGAACCCCAACGACTACAGCATGGATCACTCGGCCGGCATCGCCGTGCTCGATCCGCA
GGGCCGGCTCGCTGGCCTGATCCGTCCGCCGCTCGACCCGAAGGCGATTGCCGCCGACCTCCAACAGCTGACCAAGGTAA
CCGCTCCGTGA

Upstream 100 bases:

>100_bases
TCGGCCGCGGCGGCAGTCATGGCAACAACTAAGAAGTGTTCGGCCCCCGATTATAGAGGTCGGATCGGTATCATGAGCGT
CCGTTGCACTGGAAACCGCC

Downstream 100 bases:

>100_bases
GTCTTGTCACTTCCCTGACCTACGTGCTGCCGCATCGGCTGCTGTCCTCGCTGGCGCGCGCCCTGGCGTATTCCAAGTCG
CCAGCGACCAAGCAGTGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MFNRNTGIVLLVALAAGLGLLLGQKFLGGTPRSPWPPTQTITFYPQPRPLPQFSLRQSDGTQLVPGELNGHWTLVFLGFT
FCPDVCPTTLTDLAVAQRQWESVPESLRPRVLFVSVDPQRDPPARLGEYAHAFHKDTLAATADEPSLERFATALGFVFQK
VPGKNFAQNPNDYSMDHSAGIAVLDPQGRLAGLIRPPLDPKAIAADLQQLTKVTAP

Sequences:

>Translated_216_residues
MFNRNTGIVLLVALAAGLGLLLGQKFLGGTPRSPWPPTQTITFYPQPRPLPQFSLRQSDGTQLVPGELNGHWTLVFLGFT
FCPDVCPTTLTDLAVAQRQWESVPESLRPRVLFVSVDPQRDPPARLGEYAHAFHKDTLAATADEPSLERFATALGFVFQK
VPGKNFAQNPNDYSMDHSAGIAVLDPQGRLAGLIRPPLDPKAIAADLQQLTKVTAP
>Mature_216_residues
MFNRNTGIVLLVALAAGLGLLLGQKFLGGTPRSPWPPTQTITFYPQPRPLPQFSLRQSDGTQLVPGELNGHWTLVFLGFT
FCPDVCPTTLTDLAVAQRQWESVPESLRPRVLFVSVDPQRDPPARLGEYAHAFHKDTLAATADEPSLERFATALGFVFQK
VPGKNFAQNPNDYSMDHSAGIAVLDPQGRLAGLIRPPLDPKAIAADLQQLTKVTAP

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=136, Percent_Identity=30.1470588235294, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI281182722, Length=136, Percent_Identity=30.1470588235294, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI281182716, Length=136, Percent_Identity=30.1470588235294, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI153791313, Length=136, Percent_Identity=30.1470588235294, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4759068, Length=138, Percent_Identity=26.8115942028986, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17531419, Length=139, Percent_Identity=28.7769784172662, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6319511, Length=174, Percent_Identity=28.1609195402299, Blast_Score=73, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6319498, Length=165, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19920710, Length=155, Percent_Identity=25.8064516129032, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23534; Mature: 23534

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNRNTGIVLLVALAAGLGLLLGQKFLGGTPRSPWPPTQTITFYPQPRPLPQFSLRQSDG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
TQLVPGELNGHWTLVFLGFTFCPDVCPTTLTDLAVAQRQWESVPESLRPRVLFVSVDPQR
CEECCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
DPPARLGEYAHAFHKDTLAATADEPSLERFATALGFVFQKVPGKNFAQNPNDYSMDHSAG
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
IAVLDPQGRLAGLIRPPLDPKAIAADLQQLTKVTAP
EEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFNRNTGIVLLVALAAGLGLLLGQKFLGGTPRSPWPPTQTITFYPQPRPLPQFSLRQSDG
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCC
TQLVPGELNGHWTLVFLGFTFCPDVCPTTLTDLAVAQRQWESVPESLRPRVLFVSVDPQR
CEECCCCCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
DPPARLGEYAHAFHKDTLAATADEPSLERFATALGFVFQKVPGKNFAQNPNDYSMDHSAG
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
IAVLDPQGRLAGLIRPPLDPKAIAADLQQLTKVTAP
EEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226670 [H]