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The map label for this gene is psd

Identifier: 66767887

GI number: 66767887

Start: 1881810

End: 1882658

Strand: Reverse

Name: psd

Synonym: XC_1563

Alternate gene names: 66767887

Gene position: 1882658-1881810 (Counterclockwise)

Preceding gene: 66767888

Following gene: 66767886

Centisome position: 36.57

GC content: 66.55

Gene sequence:

>849_bases
GTGAGTCTTGTCACTTCCCTGACCTACGTGCTGCCGCATCGGCTGCTGTCCTCGCTGGCGCGCGCCCTGGCGTATTCCAA
GTCGCCAGCGACCAAGCAGTGGCTGATCGACACGGTCACGCGCAAGTTTGGCGTGGATCTGAGCGAAGCCCAGGAGCCGG
ATCCGCGCGTCTACCCCACCTTCAATGCGTTTTTCACCCGTGCGCTGAAGCCCGGCGCGCGCGTGCCCGACGCCGACCCG
CAGGCGCTGTTGATGCCGGCGGACGGGCGCATCAGCCAGCTCGGGCCGATCGAGAACGGGCGCATCTTCCAGGCCAAGGG
CCAATCGTTCACGGCTGCGGAACTGCTCGGCGATGAGTCCGCCGCCGTGCCCTTCCACAATGGCCTGTTCGCCACGGTGT
ATCTGTCGCCCAAGGACTATCACCGCGTGCACATGCCGTGGAGCGGCACCTTGCGCGAAACCGTGCATGTGCCTGGCCGG
CTTTTCAGTGTTGGCCCCGATGCAGTGCGCAACGTGCCGCGGCTGTTCGCCCGCAACGAACGCCTGGTGTGCCACTTCGA
TACCGACTTCGGCCCGATGGCCTCGGTGATGGTGGGCGCGCTGCTGGTGTCCGGCGTGGAAACCGTCTGGAGCGGTGTGG
AGATCCCGCGCTACGGCGACCGCATCACGCGCAAGGATTACCGCGGCAAGGGGATCACGCTGGAGCGCTTTGCGGAGATG
GCGCGCTTCAATTATGGATCGACGGTCATCGTCTTGCTGCCGCCGGGCGTTGCCGCGCTTGAAGGCGGGCTGGCTGCGGA
ATCGTCGGTGCGGCTGGGACAGGCGCTGGCACGACGCCAGGTGGCCTGA

Upstream 100 bases:

>100_bases
TGCTCGATCCGCAGGGCCGGCTCGCTGGCCTGATCCGTCCGCCGCTCGACCCGAAGGCGATTGCCGCCGACCTCCAACAG
CTGACCAAGGTAACCGCTCC

Downstream 100 bases:

>100_bases
CGCGCAGCGGCGCGACAGGCGTTTAAACACTTCACTCGCGCGACGCTACGGTCATCGTGCTTTCGTCAGACGTCGCCGCG
CTCTGACACGCGCACGTGCC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSLVTSLTYVLPHRLLSSLARALAYSKSPATKQWLIDTVTRKFGVDLSEAQEPDPRVYPTFNAFFTRALKPGARVPDADP
QALLMPADGRISQLGPIENGRIFQAKGQSFTAAELLGDESAAVPFHNGLFATVYLSPKDYHRVHMPWSGTLRETVHVPGR
LFSVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGITLERFAEM
ARFNYGSTVIVLLPPGVAALEGGLAAESSVRLGQALARRQVA

Sequences:

>Translated_282_residues
MSLVTSLTYVLPHRLLSSLARALAYSKSPATKQWLIDTVTRKFGVDLSEAQEPDPRVYPTFNAFFTRALKPGARVPDADP
QALLMPADGRISQLGPIENGRIFQAKGQSFTAAELLGDESAAVPFHNGLFATVYLSPKDYHRVHMPWSGTLRETVHVPGR
LFSVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGITLERFAEM
ARFNYGSTVIVLLPPGVAALEGGLAAESSVRLGQALARRQVA
>Mature_281_residues
SLVTSLTYVLPHRLLSSLARALAYSKSPATKQWLIDTVTRKFGVDLSEAQEPDPRVYPTFNAFFTRALKPGARVPDADPQ
ALLMPADGRISQLGPIENGRIFQAKGQSFTAAELLGDESAAVPFHNGLFATVYLSPKDYHRVHMPWSGTLRETVHVPGRL
FSVGPDAVRNVPRLFARNERLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGITLERFAEMA
RFNYGSTVIVLLPPGVAALEGGLAAESSVRLGQALARRQVA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=299, Percent_Identity=30.1003344481605, Blast_Score=105, Evalue=6e-23,
Organism=Escherichia coli, GI1790604, Length=281, Percent_Identity=46.9750889679715, Blast_Score=243, Evalue=9e-66,
Organism=Caenorhabditis elegans, GI71980843, Length=277, Percent_Identity=29.9638989169675, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71980840, Length=278, Percent_Identity=29.8561151079137, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6321609, Length=259, Percent_Identity=27.7992277992278, Blast_Score=107, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24649526, Length=312, Percent_Identity=28.8461538461538, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24649528, Length=312, Percent_Identity=28.8461538461538, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24649524, Length=312, Percent_Identity=28.8461538461538, Blast_Score=101, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_XANC8 (Q4UWE4)

Other databases:

- EMBL:   CP000050
- RefSeq:   YP_242649.1
- STRING:   Q4UWE4
- GeneID:   3380170
- GenomeReviews:   CP000050_GR
- KEGG:   xcb:XC_1563
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   Q4UWE4
- ProtClustDB:   PRK00044
- BioCyc:   XCAM314565:XC_1563-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 30851; Mature: 30720

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVTSLTYVLPHRLLSSLARALAYSKSPATKQWLIDTVTRKFGVDLSEAQEPDPRVYPT
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCEECC
FNAFFTRALKPGARVPDADPQALLMPADGRISQLGPIENGRIFQAKGQSFTAAELLGDES
HHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHCCCCCCCEEEEECCCCCCHHHHHCCCC
AAVPFHNGLFATVYLSPKDYHRVHMPWSGTLRETVHVPGRLFSVGPDAVRNVPRLFARNE
CCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHHEECCCEEEECCHHHHHHHHHHHHCCC
RLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGITLERFAEM
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHH
ARFNYGSTVIVLLPPGVAALEGGLAAESSVRLGQALARRQVA
HHCCCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLVTSLTYVLPHRLLSSLARALAYSKSPATKQWLIDTVTRKFGVDLSEAQEPDPRVYPT
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCEECC
FNAFFTRALKPGARVPDADPQALLMPADGRISQLGPIENGRIFQAKGQSFTAAELLGDES
HHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHCCCCCCCEEEEECCCCCCHHHHHCCCC
AAVPFHNGLFATVYLSPKDYHRVHMPWSGTLRETVHVPGRLFSVGPDAVRNVPRLFARNE
CCCCCCCCEEEEEEECCCCCEEEECCCCCCHHHHEECCCEEEECCHHHHHHHHHHHHCCC
RLVCHFDTDFGPMASVMVGALLVSGVETVWSGVEIPRYGDRITRKDYRGKGITLERFAEM
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHH
ARFNYGSTVIVLLPPGVAALEGGLAAESSVRLGQALARRQVA
HHCCCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA