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The map label for this gene is bphP [H]

Identifier: 66047666

GI number: 66047666

Start: 5305442

End: 5306572

Strand: Direct

Name: bphP [H]

Synonym: Psyr_4439

Alternate gene names: 66047666

Gene position: 5305442-5306572 (Clockwise)

Preceding gene: 66047663

Following gene: 66047668

Centisome position: 87.06

GC content: 59.24

Gene sequence:

>1131_bases
ATGCGCCTTTCCGAATTCATCGTTATTCATGTGGATCGCATCGTCGATGAATGGGAAGCCTTCGCCAGAACCCTGAAACC
TGCGGCAGAAACGATGACCAAGGCCGAGTTGCGGGATCATGCCAGGTCGATTTTGCTCGCCGCCGCACGGGACATGAAGA
CCGCGCAGAGCAAAAGCGAAGAGATTGCCAAGGCCAGAGGCGAAGAGCTGAACAAGACGCCAAGCCTGGATGAAGCAGCC
AGCAGCCATGGCGAGTTGCGCCACGAGGTCGGTTTTGATCTGGTGCAGATGACGTCGGAGTTTCGCCATCTGCGCGCCAG
CGTCATCCGCCTCTGGGTAGAAAGCCTGGCAGCGCCGCAACTGGCTGATTTTCAGGACGTGATTCGCTTCAACGAAGCCA
TCGACGAGGCGCTTGCCGAATCCACCGCAGCCTATGCGGAACGGGTTGGCCGCTCACGGGATATCTTTCTTGCCATTCTC
GGTCACGATCTGCGCGCACCGCTGCAGGCCGTCAGCATGTCCACCGAGTTGCTGGCACGCAAAATAACGCTGGACGAAAA
AACCCAGTCCTATGTTTCACGTATCCAGACCAGCACCCGCCATATGGGCTCGATGGTCAGCGATCTGCTGGAGTTCGTAC
GCAGTCGTCTGGGCGCCGGGCTGCCGGTGGAACGCAAATACATGGACCTGGCCAGCGCCTGTCGCGAGGCGATCGAAGAA
GCCTGTGCAGGGCGACCGGACTCTGCTCCGGTGCTGAACATAGAAGGCAACACCAAGGGCCACTGGGATGCCGGGCGGAT
CAGCCAGATGCTGCAGAACCTGATCGGCAATGCCCTGCAGCATGGTGCGGCCAGTCACGAGATAACGGTGACAGTCACGG
GCGCCGAGAAAGCCGTGATATTGGTGGTACACAACGAAGGCAAACCGATTGCCGAAGACGCTATCGGGACGATTTTCGAT
CCGCTGGTGCGCAGCACCGAGGAAAACAGCGAAACACGCGGCACGTCGACCAGCCTGGGCCTGGGCCTGTTCATCGTCAA
GGAAGTGGTCAACGCCCACGGCGGCAGCATCACTGTGACCTCGACCATTGGTGAGGGCACGACCTTCAATGTGGTGCTGC
CGAAAAACTGA

Upstream 100 bases:

>100_bases
CTACTGACAGAAATGACAGTAAACACTCTGTTTGTCGTGCTCTGTAAAGGCGATAATATGCGCCATCTTTCGTCACGCCT
CTCCAGCAAGGTACTCGGCC

Downstream 100 bases:

>100_bases
CCGGGGCTGACTGCCTGCTGATACGGGTGCCGCATCAGCCCAGGCAGAAAAGACCGAGTCGCAAGACTGCTCCGCTCAAC
CCTTCCACTGCGCACGGGGA

Product: sensor histidine kinase

Products: NA

Alternate protein names: Phytochrome-like protein [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MRLSEFIVIHVDRIVDEWEAFARTLKPAAETMTKAELRDHARSILLAAARDMKTAQSKSEEIAKARGEELNKTPSLDEAA
SSHGELRHEVGFDLVQMTSEFRHLRASVIRLWVESLAAPQLADFQDVIRFNEAIDEALAESTAAYAERVGRSRDIFLAIL
GHDLRAPLQAVSMSTELLARKITLDEKTQSYVSRIQTSTRHMGSMVSDLLEFVRSRLGAGLPVERKYMDLASACREAIEE
ACAGRPDSAPVLNIEGNTKGHWDAGRISQMLQNLIGNALQHGAASHEITVTVTGAEKAVILVVHNEGKPIAEDAIGTIFD
PLVRSTEENSETRGTSTSLGLGLFIVKEVVNAHGGSITVTSTIGEGTTFNVVLPKN

Sequences:

>Translated_376_residues
MRLSEFIVIHVDRIVDEWEAFARTLKPAAETMTKAELRDHARSILLAAARDMKTAQSKSEEIAKARGEELNKTPSLDEAA
SSHGELRHEVGFDLVQMTSEFRHLRASVIRLWVESLAAPQLADFQDVIRFNEAIDEALAESTAAYAERVGRSRDIFLAIL
GHDLRAPLQAVSMSTELLARKITLDEKTQSYVSRIQTSTRHMGSMVSDLLEFVRSRLGAGLPVERKYMDLASACREAIEE
ACAGRPDSAPVLNIEGNTKGHWDAGRISQMLQNLIGNALQHGAASHEITVTVTGAEKAVILVVHNEGKPIAEDAIGTIFD
PLVRSTEENSETRGTSTSLGLGLFIVKEVVNAHGGSITVTSTIGEGTTFNVVLPKN
>Mature_376_residues
MRLSEFIVIHVDRIVDEWEAFARTLKPAAETMTKAELRDHARSILLAAARDMKTAQSKSEEIAKARGEELNKTPSLDEAA
SSHGELRHEVGFDLVQMTSEFRHLRASVIRLWVESLAAPQLADFQDVIRFNEAIDEALAESTAAYAERVGRSRDIFLAIL
GHDLRAPLQAVSMSTELLARKITLDEKTQSYVSRIQTSTRHMGSMVSDLLEFVRSRLGAGLPVERKYMDLASACREAIEE
ACAGRPDSAPVLNIEGNTKGHWDAGRISQMLQNLIGNALQHGAASHEITVTVTGAEKAVILVVHNEGKPIAEDAIGTIFD
PLVRSTEENSETRGTSTSLGLGLFIVKEVVNAHGGSITVTSTIGEGTTFNVVLPKN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786783, Length=252, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1786912, Length=245, Percent_Identity=28.1632653061224, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082128, Length=227, Percent_Identity=25.5506607929515, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790436, Length=220, Percent_Identity=25.9090909090909, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI48994928, Length=235, Percent_Identity=25.9574468085106, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788393, Length=243, Percent_Identity=26.3374485596708, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786600, Length=225, Percent_Identity=24.8888888888889, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1788549, Length=237, Percent_Identity=27.4261603375527, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1789149, Length=233, Percent_Identity=27.0386266094421, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI87081816, Length=242, Percent_Identity=26.4462809917355, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 41032; Mature: 41032

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSEFIVIHVDRIVDEWEAFARTLKPAAETMTKAELRDHARSILLAAARDMKTAQSKSE
CCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIAKARGEELNKTPSLDEAASSHGELRHEVGFDLVQMTSEFRHLRASVIRLWVESLAAPQ
HHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LADFQDVIRFNEAIDEALAESTAAYAERVGRSRDIFLAILGHDLRAPLQAVSMSTELLAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
KITLDEKTQSYVSRIQTSTRHMGSMVSDLLEFVRSRLGAGLPVERKYMDLASACREAIEE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ACAGRPDSAPVLNIEGNTKGHWDAGRISQMLQNLIGNALQHGAASHEITVTVTGAEKAVI
HHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE
LVVHNEGKPIAEDAIGTIFDPLVRSTEENSETRGTSTSLGLGLFIVKEVVNAHGGSITVT
EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
STIGEGTTFNVVLPKN
EECCCCCEEEEEECCC
>Mature Secondary Structure
MRLSEFIVIHVDRIVDEWEAFARTLKPAAETMTKAELRDHARSILLAAARDMKTAQSKSE
CCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIAKARGEELNKTPSLDEAASSHGELRHEVGFDLVQMTSEFRHLRASVIRLWVESLAAPQ
HHHHHHCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LADFQDVIRFNEAIDEALAESTAAYAERVGRSRDIFLAILGHDLRAPLQAVSMSTELLAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
KITLDEKTQSYVSRIQTSTRHMGSMVSDLLEFVRSRLGAGLPVERKYMDLASACREAIEE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
ACAGRPDSAPVLNIEGNTKGHWDAGRISQMLQNLIGNALQHGAASHEITVTVTGAEKAVI
HHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE
LVVHNEGKPIAEDAIGTIFDPLVRSTEENSETRGTSTSLGLGLFIVKEVVNAHGGSITVT
EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
STIGEGTTFNVVLPKN
EECCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]