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The map label for this gene is yagR [H]

Identifier: 66047510

GI number: 66047510

Start: 5107520

End: 5109721

Strand: Reverse

Name: yagR [H]

Synonym: Psyr_4283

Alternate gene names: 66047510

Gene position: 5109721-5107520 (Counterclockwise)

Preceding gene: 66047511

Following gene: 66047509

Centisome position: 83.85

GC content: 61.94

Gene sequence:

>2202_bases
ATGAACCAGCCATTTTCGCCAATGGGCAAGCCTGTGGACCGCGTCGACGGCCGCCTGAAAGTGACCGGGGGCGCACGTTA
CGCCGGTGAATACCCTGAAGAAGGGTTGCTGTATGGCAGCGTGGTCTCCAGCACCATCGCCAACGGTCGCGTCGCCAGCA
TCGATACGAGCGAGGCAATGAAGGTTCCGGGTGTGGTCGCGGTCATCGACCACACCAATCGTCCGTGGCTGGCCAGCTAT
GACGAAAACTATGAGGACGCCGATTCGGCCGACGGTTCGCCGTTTCGTCCTTTTTACAACGACAACGTCATGTACAGCGG
CCAACCGCTCGCGCTGGTCGTTGCCGATACGTTGGAACTGGCGCGTCACGCGGGCTCGCTGGTGCGTATCGAATACGAGC
AGCAGGAGCACCAGACCGATCTGCAGGCCATGCTCGACACCGCCTATGACGCGCCTGCCGAATTGCCGCCGCCGCGTGGC
AACTTCGAAGGCGAACTGGCCAGCTCCGCGCTGAGCGTGGACGTGACGTACAGCACGCCCAGCGAGTACCACAACCCGAT
GGAACCGCATGCGTCGACCGTCCTGTATCAGGCCGATGGCAGCTTGCAGATTCACGACAAGACTCAGGGCACGCAAAACT
GTCAGGACTATCTGCACAAGGTGTTCGGCCTGGAAAAGGACAAGATCCGCGTGCTGGCCGCTTTCGTCGGTGGTGCCTTC
GGTTCTGGCCTGCGCCCGCAATATCAACTGCCGCTGGCAGTAATGGCTGCACTGCACCTCAAGCGCTCCGTGCGCCTGAC
GCTGACCCGCCAGCAGATGTTCACCTTCGGTTATCGTCCGCGCACCATTCAGCGCCTGCGTCTGGGCGCGGCTGCCAACG
GTCGTTTGCTGGCGGTCGGTCATGAAGCCATCGGGCAGACTTCGCGTTTCGAGGACTTCAGCGAACACGTCGTGGAATGG
AGCGGCATGCTCTACCACTGCGACAACGTGCAGTTGACCTACAAACTGGTGCCGCTGGACGTGTTCACGCCGCTCGACAT
GCGTGCGCCGGGTGCTGCCCTGGGCATGATCGGTCTGGAATGCGCCATGGATGAGCTGGCTTACGCGTTGGCCATCGATC
CGGTGCGCCTGCGCCTGACCAACTACGCCGAGCGCAACGGTAACGAAGACAAGCCGTATTCGAGCAAGGAATTGCGCGAA
TGCTACGCCCAGGGTGCCGAACGCTTTGGCTGGTCCAGCCGCAACCCTGAGCCACGCAGCATGCGTCAAGGCCGTCAGCT
GGTCGGTTGGGGCATGGCCGGTGGTGTCTGGGAGGCCATGCAGATGAAGGCCAGCGCCAAGGCGCGTCTGCAAGCGGACG
GCACGCTGGTGGTCAGCAGCGCTACCACCGACATTGGCACCGGCACCTATACCGTCATGACGCAGATCGCTGCAGAATCG
TCGGGTATCGAGGTGGATAACGTCAGCTTCCTGCTGGGTGACTCTTCGTTGCCGACCGCGCCGTTGCAGGGTGGCTCGTT
CACGGTGTCTTCAGTCGGTACTGCGGTGCAGCAGGCCTGTCAGGCTCTGCAGCGTCAGGTACTGGAAGTTGCCAAAGGGC
TGCATCCGCAATTCGCTTCTGTGACGCCGGATGAGGTTCGCTTCGAGGCGGGCAAGCTGTATGTCGGCGATCAGGCGCTA
TCGATGGCTGAACTGGCAGCGTCTCAGCCCCACGGTGTCATCGAGGTGCAAGTCGACGCCGAGCCGGACAAGAAGCGCGA
AGCCTATGCGGCAGCTACGCACTCGGCGGTGTTCGTCGAAGTGCTGGTCGACGAGGATCTGGGCACCATCAAGGTCAATC
GTGTGGTCAGTGCCGTGGCAGCGGGCAGGGTCGTGAACCCGAAAATGGCGCGCAGCCAGATTCTGGGCGGCGTTGTCTGG
GGCATGGGCATGGCGCTTCAGGAGGAGGCGATGCTTGACCACGACCTGGGCCGCCCGATGAACCACAGCCTGGCCGAGTA
CCATATCCCGGTGAACGCTGACATCGGCGACATTGACGTGCTGTTTGTCGAAGAACACGACGACATCGTCAACGCGCTGG
GTTCCAAGGGCGTCGGCGAGATCGGCATCGTCGGTGTGCCGGCAGCGATTGCCAACGCGATCTATCACGCCACCGGCAAA
CGTATCCGCGAGTTTCCGATCACGCTGGATAAGCTGTTGTAA

Upstream 100 bases:

>100_bases
AAGATGCGCAGCCTCTGGAGCACAACGGTTTCAAAGTCAGACTGGCCCGCCGGGCGATCATTCGTGCCTTGAGCGATGCC
GCAACAGGAGGGAGCGCCCA

Downstream 100 bases:

>100_bases
CAGCGAGCGCACATCCAACTGCCTATCGTGCCAACGCTCCGCGTTGGCATGCCGTTCGTGACGCTCTGCGTCACAAATTT
TCAGCACGGCGAGACAGCGC

Product: aldehyde oxidase and xanthine dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 733; Mature: 733

Protein sequence:

>733_residues
MNQPFSPMGKPVDRVDGRLKVTGGARYAGEYPEEGLLYGSVVSSTIANGRVASIDTSEAMKVPGVVAVIDHTNRPWLASY
DENYEDADSADGSPFRPFYNDNVMYSGQPLALVVADTLELARHAGSLVRIEYEQQEHQTDLQAMLDTAYDAPAELPPPRG
NFEGELASSALSVDVTYSTPSEYHNPMEPHASTVLYQADGSLQIHDKTQGTQNCQDYLHKVFGLEKDKIRVLAAFVGGAF
GSGLRPQYQLPLAVMAALHLKRSVRLTLTRQQMFTFGYRPRTIQRLRLGAAANGRLLAVGHEAIGQTSRFEDFSEHVVEW
SGMLYHCDNVQLTYKLVPLDVFTPLDMRAPGAALGMIGLECAMDELAYALAIDPVRLRLTNYAERNGNEDKPYSSKELRE
CYAQGAERFGWSSRNPEPRSMRQGRQLVGWGMAGGVWEAMQMKASAKARLQADGTLVVSSATTDIGTGTYTVMTQIAAES
SGIEVDNVSFLLGDSSLPTAPLQGGSFTVSSVGTAVQQACQALQRQVLEVAKGLHPQFASVTPDEVRFEAGKLYVGDQAL
SMAELAASQPHGVIEVQVDAEPDKKREAYAAATHSAVFVEVLVDEDLGTIKVNRVVSAVAAGRVVNPKMARSQILGGVVW
GMGMALQEEAMLDHDLGRPMNHSLAEYHIPVNADIGDIDVLFVEEHDDIVNALGSKGVGEIGIVGVPAAIANAIYHATGK
RIREFPITLDKLL

Sequences:

>Translated_733_residues
MNQPFSPMGKPVDRVDGRLKVTGGARYAGEYPEEGLLYGSVVSSTIANGRVASIDTSEAMKVPGVVAVIDHTNRPWLASY
DENYEDADSADGSPFRPFYNDNVMYSGQPLALVVADTLELARHAGSLVRIEYEQQEHQTDLQAMLDTAYDAPAELPPPRG
NFEGELASSALSVDVTYSTPSEYHNPMEPHASTVLYQADGSLQIHDKTQGTQNCQDYLHKVFGLEKDKIRVLAAFVGGAF
GSGLRPQYQLPLAVMAALHLKRSVRLTLTRQQMFTFGYRPRTIQRLRLGAAANGRLLAVGHEAIGQTSRFEDFSEHVVEW
SGMLYHCDNVQLTYKLVPLDVFTPLDMRAPGAALGMIGLECAMDELAYALAIDPVRLRLTNYAERNGNEDKPYSSKELRE
CYAQGAERFGWSSRNPEPRSMRQGRQLVGWGMAGGVWEAMQMKASAKARLQADGTLVVSSATTDIGTGTYTVMTQIAAES
SGIEVDNVSFLLGDSSLPTAPLQGGSFTVSSVGTAVQQACQALQRQVLEVAKGLHPQFASVTPDEVRFEAGKLYVGDQAL
SMAELAASQPHGVIEVQVDAEPDKKREAYAAATHSAVFVEVLVDEDLGTIKVNRVVSAVAAGRVVNPKMARSQILGGVVW
GMGMALQEEAMLDHDLGRPMNHSLAEYHIPVNADIGDIDVLFVEEHDDIVNALGSKGVGEIGIVGVPAAIANAIYHATGK
RIREFPITLDKLL
>Mature_733_residues
MNQPFSPMGKPVDRVDGRLKVTGGARYAGEYPEEGLLYGSVVSSTIANGRVASIDTSEAMKVPGVVAVIDHTNRPWLASY
DENYEDADSADGSPFRPFYNDNVMYSGQPLALVVADTLELARHAGSLVRIEYEQQEHQTDLQAMLDTAYDAPAELPPPRG
NFEGELASSALSVDVTYSTPSEYHNPMEPHASTVLYQADGSLQIHDKTQGTQNCQDYLHKVFGLEKDKIRVLAAFVGGAF
GSGLRPQYQLPLAVMAALHLKRSVRLTLTRQQMFTFGYRPRTIQRLRLGAAANGRLLAVGHEAIGQTSRFEDFSEHVVEW
SGMLYHCDNVQLTYKLVPLDVFTPLDMRAPGAALGMIGLECAMDELAYALAIDPVRLRLTNYAERNGNEDKPYSSKELRE
CYAQGAERFGWSSRNPEPRSMRQGRQLVGWGMAGGVWEAMQMKASAKARLQADGTLVVSSATTDIGTGTYTVMTQIAAES
SGIEVDNVSFLLGDSSLPTAPLQGGSFTVSSVGTAVQQACQALQRQVLEVAKGLHPQFASVTPDEVRFEAGKLYVGDQAL
SMAELAASQPHGVIEVQVDAEPDKKREAYAAATHSAVFVEVLVDEDLGTIKVNRVVSAVAAGRVVNPKMARSQILGGVVW
GMGMALQEEAMLDHDLGRPMNHSLAEYHIPVNADIGDIDVLFVEEHDDIVNALGSKGVGEIGIVGVPAAIANAIYHATGK
RIREFPITLDKLL

Specific function: Unknown

COG id: COG1529

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=772, Percent_Identity=24.2227979274611, Blast_Score=135, Evalue=2e-31,
Organism=Homo sapiens, GI91823271, Length=755, Percent_Identity=23.4437086092715, Blast_Score=133, Evalue=6e-31,
Organism=Escherichia coli, GI1786478, Length=732, Percent_Identity=37.7049180327869, Blast_Score=437, Evalue=1e-123,
Organism=Escherichia coli, GI1789230, Length=762, Percent_Identity=27.6902887139108, Blast_Score=211, Evalue=2e-55,
Organism=Escherichia coli, GI1789246, Length=769, Percent_Identity=26.9180754226268, Blast_Score=172, Evalue=1e-43,
Organism=Caenorhabditis elegans, GI17540638, Length=761, Percent_Identity=23.2588699080158, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17539860, Length=755, Percent_Identity=21.0596026490066, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24647193, Length=749, Percent_Identity=24.2990654205607, Blast_Score=138, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24647195, Length=750, Percent_Identity=23.3333333333333, Blast_Score=129, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24647199, Length=685, Percent_Identity=24.0875912408759, Blast_Score=129, Evalue=6e-30,
Organism=Drosophila melanogaster, GI24647197, Length=740, Percent_Identity=23.2432432432432, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI17737937, Length=738, Percent_Identity=23.8482384823848, Blast_Score=115, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24647201, Length=725, Percent_Identity=22.3448275862069, Blast_Score=111, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 79440; Mature: 79440

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPFSPMGKPVDRVDGRLKVTGGARYAGEYPEEGLLYGSVVSSTIANGRVASIDTSEAM
CCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCEEHHHHHHHHCCCEEEECCCHHHH
KVPGVVAVIDHTNRPWLASYDENYEDADSADGSPFRPFYNDNVMYSGQPLALVVADTLEL
CCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEHHHHHH
ARHAGSLVRIEYEQQEHQTDLQAMLDTAYDAPAELPPPRGNFEGELASSALSVDVTYSTP
HHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCC
SEYHNPMEPHASTVLYQADGSLQIHDKTQGTQNCQDYLHKVFGLEKDKIRVLAAFVGGAF
HHHCCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GSGLRPQYQLPLAVMAALHLKRSVRLTLTRQQMFTFGYRPRTIQRLRLGAAANGRLLAVG
CCCCCCCCCCHHHHHHHHHHHCCEEEEEEHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEC
HEAIGQTSRFEDFSEHVVEWSGMLYHCDNVQLTYKLVPLDVFTPLDMRAPGAALGMIGLE
HHHHCCCHHHHHHHHHHHHHCCEEEEECCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHH
CAMDELAYALAIDPVRLRLTNYAERNGNEDKPYSSKELRECYAQGAERFGWSSRNPEPRS
HHHHHHHHHHEECCCEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
MRQGRQLVGWGMAGGVWEAMQMKASAKARLQADGTLVVSSATTDIGTGTYTVMTQIAAES
HHCCCCEEECCCCCHHHHHHHHHHHHHEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCC
SGIEVDNVSFLLGDSSLPTAPLQGGSFTVSSVGTAVQQACQALQRQVLEVAKGLHPQFAS
CCCEECCEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VTPDEVRFEAGKLYVGDQALSMAELAASQPHGVIEVQVDAEPDKKREAYAAATHSAVFVE
CCHHHHEEECCEEEECHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEE
VLVDEDLGTIKVNRVVSAVAAGRVVNPKMARSQILGGVVWGMGMALQEEAMLDHDLGRPM
EEECCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
NHSLAEYHIPVNADIGDIDVLFVEEHDDIVNALGSKGVGEIGIVGVPAAIANAIYHATGK
CCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCH
RIREFPITLDKLL
HHHHCCCCHHHCC
>Mature Secondary Structure
MNQPFSPMGKPVDRVDGRLKVTGGARYAGEYPEEGLLYGSVVSSTIANGRVASIDTSEAM
CCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCEEHHHHHHHHCCCEEEECCCHHHH
KVPGVVAVIDHTNRPWLASYDENYEDADSADGSPFRPFYNDNVMYSGQPLALVVADTLEL
CCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEHHHHHH
ARHAGSLVRIEYEQQEHQTDLQAMLDTAYDAPAELPPPRGNFEGELASSALSVDVTYSTP
HHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEEEEEEECCC
SEYHNPMEPHASTVLYQADGSLQIHDKTQGTQNCQDYLHKVFGLEKDKIRVLAAFVGGAF
HHHCCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
GSGLRPQYQLPLAVMAALHLKRSVRLTLTRQQMFTFGYRPRTIQRLRLGAAANGRLLAVG
CCCCCCCCCCHHHHHHHHHHHCCEEEEEEHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEC
HEAIGQTSRFEDFSEHVVEWSGMLYHCDNVQLTYKLVPLDVFTPLDMRAPGAALGMIGLE
HHHHCCCHHHHHHHHHHHHHCCEEEEECCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHH
CAMDELAYALAIDPVRLRLTNYAERNGNEDKPYSSKELRECYAQGAERFGWSSRNPEPRS
HHHHHHHHHHEECCCEEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
MRQGRQLVGWGMAGGVWEAMQMKASAKARLQADGTLVVSSATTDIGTGTYTVMTQIAAES
HHCCCCEEECCCCCHHHHHHHHHHHHHEEEECCCEEEEEECCCCCCCCHHHHHHHHHHCC
SGIEVDNVSFLLGDSSLPTAPLQGGSFTVSSVGTAVQQACQALQRQVLEVAKGLHPQFAS
CCCEECCEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VTPDEVRFEAGKLYVGDQALSMAELAASQPHGVIEVQVDAEPDKKREAYAAATHSAVFVE
CCHHHHEEECCEEEECHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEE
VLVDEDLGTIKVNRVVSAVAAGRVVNPKMARSQILGGVVWGMGMALQEEAMLDHDLGRPM
EEECCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
NHSLAEYHIPVNADIGDIDVLFVEEHDDIVNALGSKGVGEIGIVGVPAAIANAIYHATGK
CCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCH
RIREFPITLDKLL
HHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]