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The map label for this gene is cydA [H]

Identifier: 66047509

GI number: 66047509

Start: 5105606

End: 5107045

Strand: Reverse

Name: cydA [H]

Synonym: Psyr_4282

Alternate gene names: 66047509

Gene position: 5107045-5105606 (Counterclockwise)

Preceding gene: 66047510

Following gene: 66047508

Centisome position: 83.81

GC content: 59.79

Gene sequence:

>1440_bases
ATGTTCGGTTTAGAGGCTATAGATCTCGCCCGGATTCAGTTCGCATTCACGATTTCGTTCCACATCCTGTTTCCTGCCAT
CACCATCGGTCTGGCAAGTTACCTGGCTGTGCTCGAAGGTCTGTGGCTGAAGACCCGCGATGACGTCTACCGTGACCTGT
ACCACTTCTGGTCGAAGATTTTTGCAGTCAACTTCGGCATGGGCGTGGTTTCCGGGCTTGTCATGGCCTACCAGTTCGGC
ACCAACTGGAGCCGCTTCTCCGACTTCGCAGGTGCTGTGACCGGCCCGCTGCTGACCTACGAGGTGCTGACCGCGTTCTT
CCTCGAAGCGGGGTTCCTCGGCGTCATGCTGTTCGGCTGGAATCGTGTCGGCCGCAACCTGCACTTCTTCTCTACGGTAA
TGGTCGCCATCGGCACGCTGATCTCCACCTTCTGGATTCTGTCGTCCAACAGCTGGATGCAGACCCCGCAAGGGTTCGAG
ATCATCGACGGTCGGGTCATTCCCACTGACTGGTTCGCTGTGGTGTTCAACCCGTCGTTCCCTTATCGCCTGACGCACAT
GGCGATCGCCGCGTTCGTGGCGACGGCGTTCTTCGTCGGTTCGTCGGCTGCCTGGCATCTGTTGCGGGGTCGCGACACAC
CTGCGGTGCGCAAGATGCTCTCGATGGCCATGTGGATGGCCCTGCTGGTGGCGCCTGTCCAGGCTGTCGTCGGTGACTTC
CACGGTCTGAACACGCTCAAGCATCAGCCTGCGAAGATTGCGGCCATCGAAGGTCACTGGGAGAACGTCGGTGACGAACC
GACCCCGCTGATCCTGTTCGGCATTCCCGACATGAAGGAAGAACGTACCAAGTACGCGGTGGAAATTCCGTACCTGGGCA
GCCTGATCCTGACTCACAGCCTGGACAAGCAGGTGCCTGCGCTCAAGGAATTCAAGCCTGAGGATCGCCCTAATTCGACG
ATCGTGTTCTGGTCGTTCCGGGTCATGGTCGCCCTTGGCATGCTGATGATCTTCACCGGCCTTTGGAGCTTGTGGCTGCG
CAAGCGCGGCACGCTGTACAACTCGCGTCCGTTCCTGTATCTGGCGTTGTGGATGGGGCCATCCGGCCTGATCGCTATTC
TCGCCGGCTGGTTCACCACCGAAATCGGCCGTCAGCCGTGGGTCGTGTACGGCCTGATGCGCACCGCCGATGCTTCGTCC
GGGCACAGCGTGGCGCAGATGAGCATCACCCTGGTGCTGTTCGTGGTCGTCTACTTCGTGCTCTTCGGCACCGGTCTTGG
CTACATGATGCGTCTGGTTCGCAAAGGGCCGAAAGCCTATGTCGAACATGTGCCGCACGGTGGTCCCGGCCAGCAACGCA
CACCGGCCCGTCCGCTCTCCGCTGCTGTTGAAGGCGAAGAAGATGGCGACAATCTTGACCGTCACGGCAAGGGGATTTAA

Upstream 100 bases:

>100_bases
GGAAACGCCAGAATAAAGAAACATAAGCACTCATTACCGTGGGGGCAATCGCTGTTGGCTTGCGGCCGGCAGCAGGTTTC
ATCTGAGAGAGGAACATCTT

Downstream 100 bases:

>100_bases
GCCATGGGTATCGATCTTCCGCTGATCTGGGCCATCATCATCGTCTTCGGCATCATGATGTACGTGGTGATGGACGGTTT
CGATCTGGGTATCGGGATTC

Product: cytochrome bd ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MFGLEAIDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDVYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGRNLHFFSTVMVAIGTLISTFWILSSNSWMQTPQGFE
IIDGRVIPTDWFAVVFNPSFPYRLTHMAIAAFVATAFFVGSSAAWHLLRGRDTPAVRKMLSMAMWMALLVAPVQAVVGDF
HGLNTLKHQPAKIAAIEGHWENVGDEPTPLILFGIPDMKEERTKYAVEIPYLGSLILTHSLDKQVPALKEFKPEDRPNST
IVFWSFRVMVALGMLMIFTGLWSLWLRKRGTLYNSRPFLYLALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASS
GHSVAQMSITLVLFVVVYFVLFGTGLGYMMRLVRKGPKAYVEHVPHGGPGQQRTPARPLSAAVEGEEDGDNLDRHGKGI

Sequences:

>Translated_479_residues
MFGLEAIDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDVYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGRNLHFFSTVMVAIGTLISTFWILSSNSWMQTPQGFE
IIDGRVIPTDWFAVVFNPSFPYRLTHMAIAAFVATAFFVGSSAAWHLLRGRDTPAVRKMLSMAMWMALLVAPVQAVVGDF
HGLNTLKHQPAKIAAIEGHWENVGDEPTPLILFGIPDMKEERTKYAVEIPYLGSLILTHSLDKQVPALKEFKPEDRPNST
IVFWSFRVMVALGMLMIFTGLWSLWLRKRGTLYNSRPFLYLALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASS
GHSVAQMSITLVLFVVVYFVLFGTGLGYMMRLVRKGPKAYVEHVPHGGPGQQRTPARPLSAAVEGEEDGDNLDRHGKGI
>Mature_479_residues
MFGLEAIDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDVYRDLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGRNLHFFSTVMVAIGTLISTFWILSSNSWMQTPQGFE
IIDGRVIPTDWFAVVFNPSFPYRLTHMAIAAFVATAFFVGSSAAWHLLRGRDTPAVRKMLSMAMWMALLVAPVQAVVGDF
HGLNTLKHQPAKIAAIEGHWENVGDEPTPLILFGIPDMKEERTKYAVEIPYLGSLILTHSLDKQVPALKEFKPEDRPNST
IVFWSFRVMVALGMLMIFTGLWSLWLRKRGTLYNSRPFLYLALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASS
GHSVAQMSITLVLFVVVYFVLFGTGLGYMMRLVRKGPKAYVEHVPHGGPGQQRTPARPLSAAVEGEEDGDNLDRHGKGI

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=522, Percent_Identity=31.0344827586207, Blast_Score=251, Evalue=9e-68,
Organism=Escherichia coli, GI1787212, Length=316, Percent_Identity=38.9240506329114, Blast_Score=239, Evalue=3e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53502; Mature: 53502

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGLEAIDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDVYRDLYHFWSKI
CCCCCHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FAVNFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRVGRNLHFFSTVMVAIGTLISTFWILSSNSWMQTPQGFEIIDGRVIPTDWFAVVFNPSF
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEECCCEEEEEECCCC
PYRLTHMAIAAFVATAFFVGSSAAWHLLRGRDTPAVRKMLSMAMWMALLVAPVQAVVGDF
CHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLKHQPAKIAAIEGHWENVGDEPTPLILFGIPDMKEERTKYAVEIPYLGSLILTHS
HCCCHHCCCCCEEEEEECCHHCCCCCCCCEEEECCCCCHHCCCCEEEECCCHHHHHHHHH
LDKQVPALKEFKPEDRPNSTIVFWSFRVMVALGMLMIFTGLWSLWLRKRGTLYNSRPFLY
HHHCCCHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASSGHSVAQMSITLVLFVVVYFV
EEEEECCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LFGTGLGYMMRLVRKGPKAYVEHVPHGGPGQQRTPARPLSAAVEGEEDGDNLDRHGKGI
HHHCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFGLEAIDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDVYRDLYHFWSKI
CCCCCHHHHHHEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FAVNFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGW
HHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NRVGRNLHFFSTVMVAIGTLISTFWILSSNSWMQTPQGFEIIDGRVIPTDWFAVVFNPSF
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCEEECCCEEEEEECCCC
PYRLTHMAIAAFVATAFFVGSSAAWHLLRGRDTPAVRKMLSMAMWMALLVAPVQAVVGDF
CHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLKHQPAKIAAIEGHWENVGDEPTPLILFGIPDMKEERTKYAVEIPYLGSLILTHS
HCCCHHCCCCCEEEEEECCHHCCCCCCCCEEEECCCCCHHCCCCEEEECCCHHHHHHHHH
LDKQVPALKEFKPEDRPNSTIVFWSFRVMVALGMLMIFTGLWSLWLRKRGTLYNSRPFLY
HHHCCCHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
LALWMGPSGLIAILAGWFTTEIGRQPWVVYGLMRTADASSGHSVAQMSITLVLFVVVYFV
EEEEECCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
LFGTGLGYMMRLVRKGPKAYVEHVPHGGPGQQRTPARPLSAAVEGEEDGDNLDRHGKGI
HHHCCHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]