| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is fatA [H]
Identifier: 66046997
GI number: 66046997
Start: 4487159
End: 4489333
Strand: Reverse
Name: fatA [H]
Synonym: Psyr_3769
Alternate gene names: 66046997
Gene position: 4489333-4487159 (Counterclockwise)
Preceding gene: 66046999
Following gene: 66046996
Centisome position: 73.67
GC content: 61.61
Gene sequence:
>2175_bases ATGAGAACGCCTTACCGACCTGCCATGCGCCACGCCTGGCGATTGTTGCCGTTGGGCATGGTCGTTGCCTCGCCGTTGCT GGCCGCAGAGGTGCTCAGCCTGGATGCGGTCAATGTCACTGGGTTCAGCGAGCCGGAAAGCACCGGCGACTATAAAGCCG AGCGGGCGTCGATGTTCGGATTCGATCAGGCTTCACTGCTGGATACGCCCGCCTCGGTGTCGGTGTTCAACGCTGCGTTG ATCAAGGACCGGCAGGCAAAGTTGCTGAGTGAAGTGCTGCGCAACGACGCGTCGGTCGGCGACGGCTATGCCCCGGTGGG CTATTACGAAAACTTTGTGGTGCGCGGGTTTTCGTTGAACGCCGCCAACAGTTATCGCATCAACGGTCGCAGCATTGCCG GCGAGCAGAACGTCGCGCTGGAAAACAAGCAGCAGGTCGAGTTGCTCAAGGGGCTTTCCGGCCTGCAGAGCGGCGTGGCC GAGCCCGGTGGCGTAATCAACTATCAGACCAAGCGGGCGCAGGACGTCCGGTCGGTCACAGTCTCTACCAACGAACACGG CGAGCGCTACATCGCGACCGACGTCGGTGGCTGGTTCGGCAGTGAACAGCAATTCGGCCTGCGCGCCAACCTTGCCCATG AAGACATTCGTTCGTATGTCGAACACGCCGATGGCCAGCGCGATTTTGCCTCGCTGGCGTTCGACTGGAACATCAGTGAG CGCGCCCTGTTGCAACTCGATGTCGAGTACCAGAGCAAAGAGCAGCGCTCGGTGCCCGGTTATCAGCTTCTGGGCGGCAC CACGCTGCCTCACGATGCCTCGCCGGGCAAATTGCTGGGTTACCAGAACTGGTCCAATCCGGTCGGTATCGACTCGCTGA ACATCAACGGACGTTTCGAATACCGCTTCAATGACAACTGGAAGGGCAGCCTCAGTGCGTCGCGCAGTCGCGTGGTCATT GATGACTACAGTGCCTTTGCGTGGGGTTGCTACGGTTCGGCCAGCTGCGCAGGGCAGGCGGTGCCCAACCACTTCAGTGC CGAAGGGGGTTATGACATCTATGATTTCCGCAGCCCGGACGACACGCGTCGCAATGACGAAGTCGAAGCGGCCATGTCCG GCACCTTCACTACCGGATCGCTTGGGCACGAGCTGACCTTCGGCAGCAGTGCCTACCGCCGTACGGTTGATACGCGCGGG ACCTTCAACGAATTCGTCGGCTCGGGCAATATCGATGAGGCGCCTGAGCAGGTGGCCCCCTCGACCCAGGCGCTGCCACA TACCGAGCGCCGCCTGGACAGCCGCCAGTACGGGCTGTTTGCCACTGACCTGATCAGCCTCAACGAGCACTGGCAAACCG TGCTGGGCGGACGCGGGGTGCGGCTCGACGAGCAGGCGTTCAACGAGGACGGCAGCGATGCGCGACACACCGAGCGCTAT GTGTTTCTGCCCCAGGCGGCGCTGATCTACAAGCCGGTGGACAATGTTTCGCTCTACACCAGCTACAGCAAGGGCCTGTC GCTGGGCGGGACGGCAGCGTGGTTCACCACCAATGCCAGTGAAATTCTGGCGCCGACCGTCTCCCGACAGCTCGAAGCAG GCATCAAGTATGACTGGCAGCGCATGAGCCTGACCGCCGCGGTGTTTCAGGCCCGCCAGGCGTACCAGTACTCCAGGCCC AACGATGACGGTACGTTTACCTATGTGCAGCAAGGCGAGCAGAAAAACACCGGTCTTGAACTGGGGGCGAGTGGCTGGGT GACTGACCGCCTGCAGATATCCGCCAGTGCGGCGGCCATCCGGGCGCGCGTTGAAGACAGCGGCACCGAGGCCTACGATG ATCATCAGGCCCTCAATGTGCCCAGATACCGTGGCACCTTGCAAGCCGACTACAGCCTGCCGGTGCCCGGGCTCGCGTTG CTCGGAGGCGTGCAGTACAGCGCCAGCAAGTACGCTGACCGTGAAGGCACCGTGCAGGTCAATGACTACGCACTGTTCAA TATCGGCAGCCGTTACAGCACCCGAATCAGCGGTTACGACACGGTACTGCGCCTGACCGTCGACAACCTGTTCGACAAAC GCTACTGGCGTGATGCCGGGGAGTATCTGGGTGACGACTACCTGTTCATGGGCGCGCCCAGAACGGCGAGATTGTCGGCC ACTGTCAACTTTTAG
Upstream 100 bases:
>100_bases GTAAAGGTTGAAAAAAACCGGCAGTGAACGTAAAAGGTTGGCCCCCTGCCGGAAGGTGCGTCGCGTCTGTCCAGGCAGCT GTCCTTGCGGAGTCTGATCG
Downstream 100 bases:
>100_bases CGGAAGGGCTTTAGTGCGCGGAGTATTGGCACGACAGTCGAGATCATCGTTCCGCCCGCTCCAGCGGGGGAATGCAGGTC TCGACGCTCCGCGTCGTCAA
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: OM2 [H]
Number of amino acids: Translated: 724; Mature: 724
Protein sequence:
>724_residues MRTPYRPAMRHAWRLLPLGMVVASPLLAAEVLSLDAVNVTGFSEPESTGDYKAERASMFGFDQASLLDTPASVSVFNAAL IKDRQAKLLSEVLRNDASVGDGYAPVGYYENFVVRGFSLNAANSYRINGRSIAGEQNVALENKQQVELLKGLSGLQSGVA EPGGVINYQTKRAQDVRSVTVSTNEHGERYIATDVGGWFGSEQQFGLRANLAHEDIRSYVEHADGQRDFASLAFDWNISE RALLQLDVEYQSKEQRSVPGYQLLGGTTLPHDASPGKLLGYQNWSNPVGIDSLNINGRFEYRFNDNWKGSLSASRSRVVI DDYSAFAWGCYGSASCAGQAVPNHFSAEGGYDIYDFRSPDDTRRNDEVEAAMSGTFTTGSLGHELTFGSSAYRRTVDTRG TFNEFVGSGNIDEAPEQVAPSTQALPHTERRLDSRQYGLFATDLISLNEHWQTVLGGRGVRLDEQAFNEDGSDARHTERY VFLPQAALIYKPVDNVSLYTSYSKGLSLGGTAAWFTTNASEILAPTVSRQLEAGIKYDWQRMSLTAAVFQARQAYQYSRP NDDGTFTYVQQGEQKNTGLELGASGWVTDRLQISASAAAIRARVEDSGTEAYDDHQALNVPRYRGTLQADYSLPVPGLAL LGGVQYSASKYADREGTVQVNDYALFNIGSRYSTRISGYDTVLRLTVDNLFDKRYWRDAGEYLGDDYLFMGAPRTARLSA TVNF
Sequences:
>Translated_724_residues MRTPYRPAMRHAWRLLPLGMVVASPLLAAEVLSLDAVNVTGFSEPESTGDYKAERASMFGFDQASLLDTPASVSVFNAAL IKDRQAKLLSEVLRNDASVGDGYAPVGYYENFVVRGFSLNAANSYRINGRSIAGEQNVALENKQQVELLKGLSGLQSGVA EPGGVINYQTKRAQDVRSVTVSTNEHGERYIATDVGGWFGSEQQFGLRANLAHEDIRSYVEHADGQRDFASLAFDWNISE RALLQLDVEYQSKEQRSVPGYQLLGGTTLPHDASPGKLLGYQNWSNPVGIDSLNINGRFEYRFNDNWKGSLSASRSRVVI DDYSAFAWGCYGSASCAGQAVPNHFSAEGGYDIYDFRSPDDTRRNDEVEAAMSGTFTTGSLGHELTFGSSAYRRTVDTRG TFNEFVGSGNIDEAPEQVAPSTQALPHTERRLDSRQYGLFATDLISLNEHWQTVLGGRGVRLDEQAFNEDGSDARHTERY VFLPQAALIYKPVDNVSLYTSYSKGLSLGGTAAWFTTNASEILAPTVSRQLEAGIKYDWQRMSLTAAVFQARQAYQYSRP NDDGTFTYVQQGEQKNTGLELGASGWVTDRLQISASAAAIRARVEDSGTEAYDDHQALNVPRYRGTLQADYSLPVPGLAL LGGVQYSASKYADREGTVQVNDYALFNIGSRYSTRISGYDTVLRLTVDNLFDKRYWRDAGEYLGDDYLFMGAPRTARLSA TVNF >Mature_724_residues MRTPYRPAMRHAWRLLPLGMVVASPLLAAEVLSLDAVNVTGFSEPESTGDYKAERASMFGFDQASLLDTPASVSVFNAAL IKDRQAKLLSEVLRNDASVGDGYAPVGYYENFVVRGFSLNAANSYRINGRSIAGEQNVALENKQQVELLKGLSGLQSGVA EPGGVINYQTKRAQDVRSVTVSTNEHGERYIATDVGGWFGSEQQFGLRANLAHEDIRSYVEHADGQRDFASLAFDWNISE RALLQLDVEYQSKEQRSVPGYQLLGGTTLPHDASPGKLLGYQNWSNPVGIDSLNINGRFEYRFNDNWKGSLSASRSRVVI DDYSAFAWGCYGSASCAGQAVPNHFSAEGGYDIYDFRSPDDTRRNDEVEAAMSGTFTTGSLGHELTFGSSAYRRTVDTRG TFNEFVGSGNIDEAPEQVAPSTQALPHTERRLDSRQYGLFATDLISLNEHWQTVLGGRGVRLDEQAFNEDGSDARHTERY VFLPQAALIYKPVDNVSLYTSYSKGLSLGGTAAWFTTNASEILAPTVSRQLEAGIKYDWQRMSLTAAVFQARQAYQYSRP NDDGTFTYVQQGEQKNTGLELGASGWVTDRLQISASAAAIRARVEDSGTEAYDDHQALNVPRYRGTLQADYSLPVPGLAL LGGVQYSASKYADREGTVQVNDYALFNIGSRYSTRISGYDTVLRLTVDNLFDKRYWRDAGEYLGDDYLFMGAPRTARLSA TVNF
Specific function: Anguibactin receptor, essential component of the iron uptake system of V.anguillarum [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=759, Percent_Identity=23.3201581027668, Blast_Score=106, Evalue=4e-24, Organism=Escherichia coli, GI1786344, Length=696, Percent_Identity=22.1264367816092, Blast_Score=93, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79755; Mature: 79755
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTPYRPAMRHAWRLLPLGMVVASPLLAAEVLSLDAVNVTGFSEPESTGDYKAERASMFG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHCC FDQASLLDTPASVSVFNAALIKDRQAKLLSEVLRNDASVGDGYAPVGYYENFVVRGFSLN CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEC AANSYRINGRSIAGEQNVALENKQQVELLKGLSGLQSGVAEPGGVINYQTKRAQDVRSVT CCCEEEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHCCCEEEE VSTNEHGERYIATDVGGWFGSEQQFGLRANLAHEDIRSYVEHADGQRDFASLAFDWNISE EECCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCC RALLQLDVEYQSKEQRSVPGYQLLGGTTLPHDASPGKLLGYQNWSNPVGIDSLNINGRFE CEEEEEECCCCCHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCEEEECCEEEE YRFNDNWKGSLSASRSRVVIDDYSAFAWGCYGSASCAGQAVPNHFSAEGGYDIYDFRSPD EEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCC DTRRNDEVEAAMSGTFTTGSLGHELTFGSSAYRRTVDTRGTFNEFVGSGNIDEAPEQVAP CCCCCCCHHHHHCCCEEECCCCCEEECCCHHHHHCCCCCCCHHHHCCCCCCCCCHHHHCC STQALPHTERRLDSRQYGLFATDLISLNEHWQTVLGGRGVRLDEQAFNEDGSDARHTERY CCCCCCCHHHHHCCHHCCEEEHHHHHHHHHHHHHHCCCCCEECHHHCCCCCCCCCCCCEE VFLPQAALIYKPVDNVSLYTSYSKGLSLGGTAAWFTTNASEILAPTVSRQLEAGIKYDWQ EEECCCEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHH RMSLTAAVFQARQAYQYSRPNDDGTFTYVQQGEQKNTGLELGASGWVTDRLQISASAAAI HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEECCCCCEECEEEEEHHHHHH RARVEDSGTEAYDDHQALNVPRYRGTLQADYSLPVPGLALLGGVQYSASKYADREGTVQV EEECCCCCCCCCCCCHHCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHHHCCCCCCCEEE NDYALFNIGSRYSTRISGYDTVLRLTVDNLFDKRYWRDAGEYLGDDYLFMGAPRTARLSA CCEEEEECCCCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEE TVNF EECC >Mature Secondary Structure MRTPYRPAMRHAWRLLPLGMVVASPLLAAEVLSLDAVNVTGFSEPESTGDYKAERASMFG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHHCC FDQASLLDTPASVSVFNAALIKDRQAKLLSEVLRNDASVGDGYAPVGYYENFVVRGFSLN CCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEC AANSYRINGRSIAGEQNVALENKQQVELLKGLSGLQSGVAEPGGVINYQTKRAQDVRSVT CCCEEEECCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHCCCEEEE VSTNEHGERYIATDVGGWFGSEQQFGLRANLAHEDIRSYVEHADGQRDFASLAFDWNISE EECCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCEEEEEECCCCC RALLQLDVEYQSKEQRSVPGYQLLGGTTLPHDASPGKLLGYQNWSNPVGIDSLNINGRFE CEEEEEECCCCCHHHHCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCEEEECCEEEE YRFNDNWKGSLSASRSRVVIDDYSAFAWGCYGSASCAGQAVPNHFSAEGGYDIYDFRSPD EEECCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCC DTRRNDEVEAAMSGTFTTGSLGHELTFGSSAYRRTVDTRGTFNEFVGSGNIDEAPEQVAP CCCCCCCHHHHHCCCEEECCCCCEEECCCHHHHHCCCCCCCHHHHCCCCCCCCCHHHHCC STQALPHTERRLDSRQYGLFATDLISLNEHWQTVLGGRGVRLDEQAFNEDGSDARHTERY CCCCCCCHHHHHCCHHCCEEEHHHHHHHHHHHHHHCCCCCEECHHHCCCCCCCCCCCCEE VFLPQAALIYKPVDNVSLYTSYSKGLSLGGTAAWFTTNASEILAPTVSRQLEAGIKYDWQ EEECCCEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHH RMSLTAAVFQARQAYQYSRPNDDGTFTYVQQGEQKNTGLELGASGWVTDRLQISASAAAI HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEECCCCCEECEEEEEHHHHHH RARVEDSGTEAYDDHQALNVPRYRGTLQADYSLPVPGLALLGGVQYSASKYADREGTVQV EEECCCCCCCCCCCCHHCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHHHCCCCCCCEEE NDYALFNIGSRYSTRISGYDTVLRLTVDNLFDKRYWRDAGEYLGDDYLFMGAPRTARLSA CCEEEEECCCCCEEEECCCCEEEEEEHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEE TVNF EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2830268; 13129954; 2311935 [H]