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The map label for this gene is csrA1 [H]

Identifier: 66046979

GI number: 66046979

Start: 4469613

End: 4469807

Strand: Reverse

Name: csrA1 [H]

Synonym: Psyr_3751

Alternate gene names: 66046979

Gene position: 4469807-4469613 (Counterclockwise)

Preceding gene: 66046980

Following gene: 66046974

Centisome position: 73.35

GC content: 55.9

Gene sequence:

>195_bases
ATGCTGGTACTGACGCGGGAAATTGGCGAAACGTTTTCCATTGGTGATGACATCACCGTGCAGATTCTGGGCATCAACGG
CAATCAGGTCAGGCTCGGGATCAATGCCCCGAAAGACGTCAAGGTTCACCGCGCCGAAGTCTACAAGCGAATCGCCAGGA
CGCTTGCGCAACAGGCAACAACGCCGCTTCGGTGA

Upstream 100 bases:

>100_bases
CGGTGCTGTTGCAGGACGTTACTGATTTGCCATCAGCGCATTGAAGCGCCTTGTTTCGCCATGCACCCTGCCTCTTTTGC
GCAACGCAAGGGTGGGAAAA

Downstream 100 bases:

>100_bases
GCGGCGTGGTCAGCAGGCGACGTTGTGGGCAAATGACCTGACTCGGCCTTTAGAGGCTATTCGAAAAACTCCTTCGGCAC
GTCGTGCTTGAGCATCAGCT

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MLVLTREIGETFSIGDDITVQILGINGNQVRLGINAPKDVKVHRAEVYKRIARTLAQQATTPLR

Sequences:

>Translated_64_residues
MLVLTREIGETFSIGDDITVQILGINGNQVRLGINAPKDVKVHRAEVYKRIARTLAQQATTPLR
>Mature_64_residues
MLVLTREIGETFSIGDDITVQILGINGNQVRLGINAPKDVKVHRAEVYKRIARTLAQQATTPLR

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

Organism=Escherichia coli, GI1789047, Length=60, Percent_Identity=58.3333333333333, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- InterPro:   IPR012340
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 7100; Mature: 7100

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLTREIGETFSIGDDITVQILGINGNQVRLGINAPKDVKVHRAEVYKRIARTLAQQAT
CEEEECCCCCEECCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
TPLR
CCCC
>Mature Secondary Structure
MLVLTREIGETFSIGDDITVQILGINGNQVRLGINAPKDVKVHRAEVYKRIARTLAQQAT
CEEEECCCCCEECCCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
TPLR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]