Click here to switch to the map view.

The map label for this gene is adrA [H]

Identifier: 66046882

GI number: 66046882

Start: 4338567

End: 4339493

Strand: Direct

Name: adrA [H]

Synonym: Psyr_3653

Alternate gene names: 66046882

Gene position: 4338567-4339493 (Clockwise)

Preceding gene: 66046881

Following gene: 66046890

Centisome position: 71.2

GC content: 57.5

Gene sequence:

>927_bases
ATGAATTTTCCTACCCAGACCCATGCAATCGACTTCGATACGGCTGAACTGCAACGCCTCGGGTTTAGAAATCGACCTGA
CGCCGTGCTTCCACCCCCGTCACTGCCCGAGCTGATCTACCAGCTTGGGCGACAATTGCAGACCAGTCTGGAAGCCGAGC
GGATACTGACCCTGTTTTTTCAGGGTGTACAACGCTTCCTGCCATTGAGCGGTCTGATGTATCGACATATCGAAAGCGAC
TTGCAGCTGCGTCTGGGCGAGATGTCATCCGACAGCGCCATTTTTCACCTGCGTCATGAAGGCAAATGCATCGGCGAACT
GGAGTTTCAAGGCGCCAGGCCATTCGACACGCGGCAATTGAGCGACCTTGAATCGCTGCTGGTCTGCCTGGTGTACCCGC
TGCTGAATGCGCTGCTGTACCGCATTGCCACGCAAACTGCCCTGCGTGATCCGCTGACCAGCACCGGCAACCGCATCGCC
ATGGATCAGGGCCTGGCCCGAGAAATCGAAATTTCACGGCGCCACAAGCAACCGCTGTCACTGCTGATGCTGGATATCGA
CCACTTCAAGAAAGTGAATGATGAATACGGTCATCATACCGGCGACGATGTGCTGAAAACCGTTGCGCAGAGCCTGAAGG
CGCAACTGCGCAATATTGATCGGGTGTTCCGCTACGGCGGTGAAGAGTTCGTGGTGATTCTGTCCAACACCGGCGCCGAC
TCTGCCGAACTGATTGGTCAGCGTCTGTGCCAGGCGGTGCGCAATCTCGAGTTTCGCGAACTCAGCCCGGCGTTGACCAT
GACCGTGAGCCTGGGTTGCTCGACACTGCTGCCGACGGAAACAGCCGACAGCCTGCTGCGCCGTGCCGATAATGCGCTGT
ACGTCGCCAAACGCGAAGGCCGTAACCGTATCGCCATGGCCAGCTAG

Upstream 100 bases:

>100_bases
TAAACCACTGATTTTAATAAGTCTGGCCAAAAATGAACCGAATGGCACCACGTCCCCTCTAACCCAGCCAAGCCAGCAAT
ATGTGCTGAGGAGCGAAGAG

Downstream 100 bases:

>100_bases
CCCTCTCTCCCGCCTTTTCGCCCGCCCCTACGCCTCCAGCGCGGCAACACGTCCTCGCGGCTTGACCCTGTCCAGTTGCA
TGCAACGCTCAAGAAACAGG

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNFPTQTHAIDFDTAELQRLGFRNRPDAVLPPPSLPELIYQLGRQLQTSLEAERILTLFFQGVQRFLPLSGLMYRHIESD
LQLRLGEMSSDSAIFHLRHEGKCIGELEFQGARPFDTRQLSDLESLLVCLVYPLLNALLYRIATQTALRDPLTSTGNRIA
MDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGAD
SAELIGQRLCQAVRNLEFRELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS

Sequences:

>Translated_308_residues
MNFPTQTHAIDFDTAELQRLGFRNRPDAVLPPPSLPELIYQLGRQLQTSLEAERILTLFFQGVQRFLPLSGLMYRHIESD
LQLRLGEMSSDSAIFHLRHEGKCIGELEFQGARPFDTRQLSDLESLLVCLVYPLLNALLYRIATQTALRDPLTSTGNRIA
MDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGAD
SAELIGQRLCQAVRNLEFRELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS
>Mature_308_residues
MNFPTQTHAIDFDTAELQRLGFRNRPDAVLPPPSLPELIYQLGRQLQTSLEAERILTLFFQGVQRFLPLSGLMYRHIESD
LQLRLGEMSSDSAIFHLRHEGKCIGELEFQGARPFDTRQLSDLESLLVCLVYPLLNALLYRIATQTALRDPLTSTGNRIA
MDQGLAREIEISRRHKQPLSLLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGAD
SAELIGQRLCQAVRNLEFRELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREGRNRIAMAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=220, Percent_Identity=35, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=32.7777777777778, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787816, Length=219, Percent_Identity=36.0730593607306, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787262, Length=185, Percent_Identity=34.0540540540541, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081881, Length=131, Percent_Identity=41.9847328244275, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082007, Length=183, Percent_Identity=33.879781420765, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787802, Length=210, Percent_Identity=29.5238095238095, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=36.0248447204969, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787541, Length=159, Percent_Identity=34.5911949685535, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=30.5882352941176, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081977, Length=152, Percent_Identity=34.2105263157895, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=31.9018404907975, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=25.4545454545455, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=183, Percent_Identity=26.775956284153, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR007894 [H]

Pfam domain/function: PF00990 GGDEF; PF05230 MASE2 [H]

EC number: NA

Molecular weight: Translated: 34762; Mature: 34762

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFPTQTHAIDFDTAELQRLGFRNRPDAVLPPPSLPELIYQLGRQLQTSLEAERILTLFF
CCCCCCCCEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QGVQRFLPLSGLMYRHIESDLQLRLGEMSSDSAIFHLRHEGKCIGELEFQGARPFDTRQL
HHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHH
SDLESLLVCLVYPLLNALLYRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCEEECCCCCHHHHHHHHHHCCCHH
LLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGAD
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
SAELIGQRLCQAVRNLEFRELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREG
HHHHHHHHHHHHHHCCCHHHCCCHHEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
RNRIAMAS
CCEECCCC
>Mature Secondary Structure
MNFPTQTHAIDFDTAELQRLGFRNRPDAVLPPPSLPELIYQLGRQLQTSLEAERILTLFF
CCCCCCCCEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QGVQRFLPLSGLMYRHIESDLQLRLGEMSSDSAIFHLRHEGKCIGELEFQGARPFDTRQL
HHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCCHHHH
SDLESLLVCLVYPLLNALLYRIATQTALRDPLTSTGNRIAMDQGLAREIEISRRHKQPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCEEECCCCCHHHHHHHHHHCCCHH
LLMLDIDHFKKVNDEYGHHTGDDVLKTVAQSLKAQLRNIDRVFRYGGEEFVVILSNTGAD
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
SAELIGQRLCQAVRNLEFRELSPALTMTVSLGCSTLLPTETADSLLRRADNALYVAKREG
HHHHHHHHHHHHHHCCCHHHCCCHHEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCC
RNRIAMAS
CCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]