Click here to switch to the map view.

The map label for this gene is ccmC [H]

Identifier: 66046620

GI number: 66046620

Start: 4049235

End: 4050038

Strand: Reverse

Name: ccmC [H]

Synonym: Psyr_3391

Alternate gene names: 66046620

Gene position: 4050038-4049235 (Counterclockwise)

Preceding gene: 66046621

Following gene: 66046619

Centisome position: 66.46

GC content: 62.44

Gene sequence:

>804_bases
ATGAAAAGCAACGCCATGAAAAGCAGCATCGGTTGGGCCTGGCTGCACACGCTCGGCTCGCCGAAAGGTTTTTATCGCGT
CAGCGCACGCCTGCTGCCCTGGATGAGTGTTGTCGCTGTGCTGTTGCTGGTCATCGGCATGGTCTGGGGCCTGGCGTTCG
CGCCGCCGGATTACCAGCAGGGCAACAGCTTCCGGATCATTTATATCCACGTACCTGCCGCGATGCTCGCCCAGTCCTGT
TACGTCATGCTGGCCGTGTGCGGGCTGGTCGGGCTGGTCTGGAGAATCAAGCTGGCCGATGTCGCGCTGCACTGCGCTGC
ACCCATCGGCGCGTGGATGACCGCGCTGGCGCTGGCGACCGGCGCGATCTGGGGCAAGCCCACCTGGGGGGCATGGTGGG
TCTGGGACGCGCGACTGACCTCGATGCTGATTCTGCTGTTCCTGTATTTCGGCCTGATCGCGCTGGGCAATGCCATCAGT
AACCGCGACAGCGCCGCCAAGGCCTGCGCGGTGCTGGCGATCGTCGGCGTGGTGAACATTCCGATCATCAAGTATTCGGT
CGAGTGGTGGAACACCCTGCATCAGGGGTCGACGTTCAGCCTCACGGAGAAACCCGCCATGCCGGCTGAAATGTGGCTGC
CGCTGCTGTTCACCACGCTGGGTTTCTACTGCTTGTTCGGCGTGCTGTTGATGATGCGCATGCGTCTTGAAGTGTTGCGT
CGCGAAGCGCGCACCCAGTGGGTCAAGGCCGAGATTCTGCGCAGCCTGGGGCACACAGCAGCGCAGTCGGAGAACACGCT
TTGA

Upstream 100 bases:

>100_bases
ACCCTTTGCGATAGCCGCTGGCCTGAAAATCAGCATCGGCGAATAATTGAGGCTCCGGCATCGAGACTTCGATGCCGGTC
AACACCCTGGATGCACCCTG

Downstream 100 bases:

>100_bases
GTTTTGCATCGTTCAGCGATTTTCTTGCCATGGGTCGCCACGGGGTATTTGTCTGGTCGGCCTACGGCCTGTGCCTTGTG
GTGCTGCTGATCAACGTGGC

Product: cytochrome c-type biogenesis protein CcmC

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmC [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MKSNAMKSSIGWAWLHTLGSPKGFYRVSARLLPWMSVVAVLLLVIGMVWGLAFAPPDYQQGNSFRIIYIHVPAAMLAQSC
YVMLAVCGLVGLVWRIKLADVALHCAAPIGAWMTALALATGAIWGKPTWGAWWVWDARLTSMLILLFLYFGLIALGNAIS
NRDSAAKACAVLAIVGVVNIPIIKYSVEWWNTLHQGSTFSLTEKPAMPAEMWLPLLFTTLGFYCLFGVLLMMRMRLEVLR
REARTQWVKAEILRSLGHTAAQSENTL

Sequences:

>Translated_267_residues
MKSNAMKSSIGWAWLHTLGSPKGFYRVSARLLPWMSVVAVLLLVIGMVWGLAFAPPDYQQGNSFRIIYIHVPAAMLAQSC
YVMLAVCGLVGLVWRIKLADVALHCAAPIGAWMTALALATGAIWGKPTWGAWWVWDARLTSMLILLFLYFGLIALGNAIS
NRDSAAKACAVLAIVGVVNIPIIKYSVEWWNTLHQGSTFSLTEKPAMPAEMWLPLLFTTLGFYCLFGVLLMMRMRLEVLR
REARTQWVKAEILRSLGHTAAQSENTL
>Mature_267_residues
MKSNAMKSSIGWAWLHTLGSPKGFYRVSARLLPWMSVVAVLLLVIGMVWGLAFAPPDYQQGNSFRIIYIHVPAAMLAQSC
YVMLAVCGLVGLVWRIKLADVALHCAAPIGAWMTALALATGAIWGKPTWGAWWVWDARLTSMLILLFLYFGLIALGNAIS
NRDSAAKACAVLAIVGVVNIPIIKYSVEWWNTLHQGSTFSLTEKPAMPAEMWLPLLFTTLGFYCLFGVLLMMRMRLEVLR
REARTQWVKAEILRSLGHTAAQSENTL

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=244, Percent_Identity=50.8196721311475, Blast_Score=247, Evalue=6e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29614; Mature: 29614

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSNAMKSSIGWAWLHTLGSPKGFYRVSARLLPWMSVVAVLLLVIGMVWGLAFAPPDYQQ
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GNSFRIIYIHVPAAMLAQSCYVMLAVCGLVGLVWRIKLADVALHCAAPIGAWMTALALAT
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAIWGKPTWGAWWVWDARLTSMLILLFLYFGLIALGNAISNRDSAAKACAVLAIVGVVNI
HCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
PIIKYSVEWWNTLHQGSTFSLTEKPAMPAEMWLPLLFTTLGFYCLFGVLLMMRMRLEVLR
HHHEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REARTQWVKAEILRSLGHTAAQSENTL
HHHHHHHHHHHHHHHHCHHHHCCCCCC
>Mature Secondary Structure
MKSNAMKSSIGWAWLHTLGSPKGFYRVSARLLPWMSVVAVLLLVIGMVWGLAFAPPDYQQ
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GNSFRIIYIHVPAAMLAQSCYVMLAVCGLVGLVWRIKLADVALHCAAPIGAWMTALALAT
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAIWGKPTWGAWWVWDARLTSMLILLFLYFGLIALGNAISNRDSAAKACAVLAIVGVVNI
HCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
PIIKYSVEWWNTLHQGSTFSLTEKPAMPAEMWLPLLFTTLGFYCLFGVLLMMRMRLEVLR
HHHEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REARTQWVKAEILRSLGHTAAQSENTL
HHHHHHHHHHHHHHHHCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]