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The map label for this gene is cmpR [H]

Identifier: 66046385

GI number: 66046385

Start: 3781771

End: 3782748

Strand: Direct

Name: cmpR [H]

Synonym: Psyr_3156

Alternate gene names: 66046385

Gene position: 3781771-3782748 (Clockwise)

Preceding gene: 66046382

Following gene: 66046386

Centisome position: 62.06

GC content: 60.02

Gene sequence:

>978_bases
ATGTCTGTGAATGGCCGCAATGATGCCGCTCGCCACGACATTAAAAAAGCTATGATTTATCATCCACAGCATAAGAAATA
CTTTGTCATGCGTCGGCTGAACCTCAATCACCTGCACACGTTTTCGCTGGTCATCGCCCATGGCAGTTTTTCTGCGGCGG
CAGAGCGTCTGCACCTGACCCAGCCAGCGGTCAGCCTGCACGTGCGACAACTGGAAGATCAGTTGAAGCTGCAGCTGATC
GAACGGGTCGGCAAACGCCTCAAACCTACCTCCGCAGGCACTGTACTGTTGGAGCATATCGCGCGCATCGATGCGGTGGT
CGAAGACGCTTTGCAGGCACTGTCCAGCCATGCCAGCGGCGTTGCCGGCAAAATCGCCATCGGCACCGGCGCGACAGCCT
GCATCCATCTGCTGCCGCCCATGTTGCAGGCGCTGCGTCGGCGCTTCCCGGAACTGGATGTGCGCGTCAGTACCGGCAAC
ACCGAAGGCATCCTCAAGGCGGTCGAAGAAAACCTTCTGGACCTGGCACTGGTCACCCTGCCCGCCGCCAGCCGCAGTCT
GCACATTACGCCGCTGCTTGAGGATGCGTTCGTGGCGATCTTCGCCAGCAGCCAGCGACCGATGCCGGCGCACATGACCC
CGGAGCGCCTCAGCGCACAACCGCTGGTCGTATTCGAAGCAGGCAGCAGTACGCGTCTGCTGATCGATGAATGGTTCCTG
CACGCCGGGATCCGGGTAAAACCGGTCATGGAACTGGGCAGTATCGAAGCGATCAAGGAAATGGTCGCCGCAGACCTGGG
CTACAGCATCGTGCCGCGGATGGCCGTTGCTGCGCTGCACCATCGCCGCGGCTTGCAAATGCTGCCACTGGCAACAGCGC
TGAGTCGCACATTGGGAATCGCCTTGCGCCAGGACAAACCGGTCAGCAAGGCCCTGCGTCAGGTGCTGGATGCACTGCAA
TACCTCAAAAGGTCATGA

Upstream 100 bases:

>100_bases
TGTAGCACGTGGTCAGCGTAAATCGCCTGTACAGCGGGCATGTCATCGTCGCGGGCGTCACGCAGGTCAAAGATTGAAGT
CATGTCCGAGCTCTGTACGA

Downstream 100 bases:

>100_bases
AGGCGCGCCACGATAGAGGCTTGAGCGCGCCCATGCACTATAAAGAGCAACGGCACTCGGCCTGGCAAATAAGGTCGACA
GTTGCACAGGCAGCGAATCA

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSVNGRNDAARHDIKKAMIYHPQHKKYFVMRRLNLNHLHTFSLVIAHGSFSAAAERLHLTQPAVSLHVRQLEDQLKLQLI
ERVGKRLKPTSAGTVLLEHIARIDAVVEDALQALSSHASGVAGKIAIGTGATACIHLLPPMLQALRRRFPELDVRVSTGN
TEGILKAVEENLLDLALVTLPAASRSLHITPLLEDAFVAIFASSQRPMPAHMTPERLSAQPLVVFEAGSSTRLLIDEWFL
HAGIRVKPVMELGSIEAIKEMVAADLGYSIVPRMAVAALHHRRGLQMLPLATALSRTLGIALRQDKPVSKALRQVLDALQ
YLKRS

Sequences:

>Translated_325_residues
MSVNGRNDAARHDIKKAMIYHPQHKKYFVMRRLNLNHLHTFSLVIAHGSFSAAAERLHLTQPAVSLHVRQLEDQLKLQLI
ERVGKRLKPTSAGTVLLEHIARIDAVVEDALQALSSHASGVAGKIAIGTGATACIHLLPPMLQALRRRFPELDVRVSTGN
TEGILKAVEENLLDLALVTLPAASRSLHITPLLEDAFVAIFASSQRPMPAHMTPERLSAQPLVVFEAGSSTRLLIDEWFL
HAGIRVKPVMELGSIEAIKEMVAADLGYSIVPRMAVAALHHRRGLQMLPLATALSRTLGIALRQDKPVSKALRQVLDALQ
YLKRS
>Mature_324_residues
SVNGRNDAARHDIKKAMIYHPQHKKYFVMRRLNLNHLHTFSLVIAHGSFSAAAERLHLTQPAVSLHVRQLEDQLKLQLIE
RVGKRLKPTSAGTVLLEHIARIDAVVEDALQALSSHASGVAGKIAIGTGATACIHLLPPMLQALRRRFPELDVRVSTGNT
EGILKAVEENLLDLALVTLPAASRSLHITPLLEDAFVAIFASSQRPMPAHMTPERLSAQPLVVFEAGSSTRLLIDEWFLH
AGIRVKPVMELGSIEAIKEMVAADLGYSIVPRMAVAALHHRRGLQMLPLATALSRTLGIALRQDKPVSKALRQVLDALQY
LKRS

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=288, Percent_Identity=32.9861111111111, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87082132, Length=245, Percent_Identity=30.2040816326531, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI157672245, Length=277, Percent_Identity=28.158844765343, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1790399, Length=290, Percent_Identity=25.1724137931034, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788748, Length=288, Percent_Identity=25, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693105, Length=279, Percent_Identity=23.6559139784946, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=27.710843373494, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=28.4615384615385, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790262, Length=286, Percent_Identity=26.9230769230769, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789506, Length=240, Percent_Identity=27.0833333333333, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787806, Length=259, Percent_Identity=23.1660231660232, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=28.1632653061224, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789204, Length=281, Percent_Identity=25.6227758007117, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=178, Percent_Identity=26.9662921348315, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788296, Length=235, Percent_Identity=27.2340425531915, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI2367136, Length=123, Percent_Identity=32.520325203252, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081904, Length=305, Percent_Identity=23.2786885245902, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789639, Length=125, Percent_Identity=28, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787589, Length=143, Percent_Identity=30.0699300699301, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1789173, Length=122, Percent_Identity=33.6065573770492, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35700; Mature: 35569

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNGRNDAARHDIKKAMIYHPQHKKYFVMRRLNLNHLHTFSLVIAHGSFSAAAERLHLT
CCCCCCCHHHHHHHHHHHHCCCCCCCEEEHHHCCCCHHHHEEEEEECCCHHHHHHHHHCC
QPAVSLHVRQLEDQLKLQLIERVGKRLKPTSAGTVLLEHIARIDAVVEDALQALSSHASG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VAGKIAIGTGATACIHLLPPMLQALRRRFPELDVRVSTGNTEGILKAVEENLLDLALVTL
CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHC
PAASRSLHITPLLEDAFVAIFASSQRPMPAHMTPERLSAQPLVVFEAGSSTRLLIDEWFL
CCCCCCEEEEEHHHHHHHHHEECCCCCCCCCCCHHHCCCCCEEEEECCCCCEEHHHHHHH
HAGIRVKPVMELGSIEAIKEMVAADLGYSIVPRMAVAALHHRRGLQMLPLATALSRTLGI
HCCCEEEHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALRQDKPVSKALRQVLDALQYLKRS
HCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVNGRNDAARHDIKKAMIYHPQHKKYFVMRRLNLNHLHTFSLVIAHGSFSAAAERLHLT
CCCCCCHHHHHHHHHHHHCCCCCCCEEEHHHCCCCHHHHEEEEEECCCHHHHHHHHHCC
QPAVSLHVRQLEDQLKLQLIERVGKRLKPTSAGTVLLEHIARIDAVVEDALQALSSHASG
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VAGKIAIGTGATACIHLLPPMLQALRRRFPELDVRVSTGNTEGILKAVEENLLDLALVTL
CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHC
PAASRSLHITPLLEDAFVAIFASSQRPMPAHMTPERLSAQPLVVFEAGSSTRLLIDEWFL
CCCCCCEEEEEHHHHHHHHHEECCCCCCCCCCCHHHCCCCCEEEEECCCCCEEHHHHHHH
HAGIRVKPVMELGSIEAIKEMVAADLGYSIVPRMAVAALHHRRGLQMLPLATALSRTLGI
HCCCEEEHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALRQDKPVSKALRQVLDALQYLKRS
HCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]