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The map label for this gene is xpsD [H]

Identifier: 66046370

GI number: 66046370

Start: 3766783

End: 3769113

Strand: Reverse

Name: xpsD [H]

Synonym: Psyr_3141

Alternate gene names: 66046370

Gene position: 3769113-3766783 (Counterclockwise)

Preceding gene: 66046371

Following gene: 66046369

Centisome position: 61.85

GC content: 61.82

Gene sequence:

>2331_bases
ATGGGTACCTTTTCTGGAGTTCCTGCCATCGCTACCTTGCGCACACCCTTGCTTTGCCTGGCCACCGCCGTCGCCCTTGG
CGGCTGCGCGTCACAGTCAGACACACTCGATCCCGACAATGGCATGCTGCAGGAAGCGCTCCAGGGAACCGGTTCACAAC
GTCCGCCGGTAGACCCGCGCAGCGAAAGACCGCCCGTCGAGCCACCTTCCCAGCAGACGACGAGCTCGCCGCAGCGGCAG
ATCATCAAAGGCAACCAGCGTTTCATCCGTCAGCCCGCCGCTGCTCCCGCAGCGCGTCAGGCCGAGACCGGTGACATCGT
CTTCAACTTCACCAATCAGCCGATTCAGGCGGTGATCAACAGCATCATGGGCGATCTGCTGCACGAGAATTACAGCATTG
CCCAGGGTGTGAAGGGCGATGTGAGCTTCTCGACGTCCAAGCCGGTCAACAAGCAGCAGGCGCTGTCGATTCTCGAGACG
CTGCTGTCCTGGACCGACAACGCGATGATCAAGCAGGGCAATCGCTACGTGATCCTGCCGTCGAATCAGGCGGTAGCGGG
CAAGCTGGTCCCGGAAATGCGCGTGGCGCAACCTTCGGCCGGCATGTCGGCGCGGCTGTTCCCGCTGCGCTACATCTCGG
CGACCGAGATGCAGAAGCTGCTCAAGCCGTTCGCCCGGGAGAACGCCTTTCTGCTGGTCGACCCGGCGCGCAACGTGCTC
AGCCTGGCCGGTACTCCGGAAGAGCTGGCCAACTATCAGGACACCATCGACACCTTCGATGTGGACTGGCTCAAAGGCAT
GTCTGTCGGTGTTTTCGGCCTGCAACGTGCCTCGGTTGGCGAACTGATGCCCGAGCTGCAGAAAATGTTCGGCCCGGAAA
GCGGCATGCCGCTGGCGGGCATGGTGCGTTTCCTGCCGATCGAGCGGACCAACTCGGTGGTGGCGATTTCCTCGCAGCCT
GAATACCTGCACGAAGTCGGCGAGTGGATTCACACCATCGATGAGGGCGGTGGCAACGAGCCGCAGATGTATGTGTATGA
CGTGCGCAACATGAAGGCCACCGATCTGGCCAAGTACCTGCGGCAGATCTACGGCACCGGCGCCATCAAGGATGACTCGC
CGGCCAAGGTCGCACCGGGGCTGCGCACCACCACCTTGTCATCGCTCAACTCCAGTGGCGGCAGCGGTGTGGGCGGCATG
AGCAGCTCAAATGGTCTGGGCAGCAACGGCGGCGGCATGGGTAATGGCGGAGGCTTTGGCAACAGTCAGAGCATGAACAA
CAGCCAGAATAGCGCCGACAGCGAGTCGGAAGGCGACGATCAGGGCGGCGGCGATTCGGATTCGGACTCGGCCAGCCAGG
ACGGTAGCGGCTCGTCTGGCGCCAGTAAGTCGCTGGACGCCAGCACCCGCATCACTGCGCAGAAGAGCAGCAACCAGTTG
CTGGTACGCACGCGTCCGGCGCAATGGAAGGAAATCGAATCGGCCATCAAACGCCTCGATAATCCACCGCTGCAAGTGCA
GATCGAGACGCGCATTCTGGAAGTCAAACTGACCGGCGAACTGGACATGGGCGTGCAGTGGTACCTCGGGCGTCTGGCGG
GCAATTCGGGTACCACCGGCAACGTCACCAATACCGCTGGCAGTCAGGGGGCGATCGGTACTGGCGGGGCCGCGCTGGCC
TCTACTGACGCGTTCTTCTATTCCTTTGTCAGCAACAACCTGCAGGTCGCCTTGCGCGCCCTCGAAACCAACGGCCGCAC
GCAGGTCCTGTCGGCGCCTTCGCTGGTGGTCATGAACAACCAGCAGGCGCAGATTCAGGTCGGCGACAACATCCCGATCA
GCCAGACCTCGATCAACACCAACACCAATACCGGCACCACATTGAGCAGTGTCGAGTATGTGCAGACTGGCGTGATTCTC
GATGTCGTGCCGCGCATTAATCCGGGCGGCCTGGTGTATATGGATATCCAGCAGCAGGTCAGTGATGCGGACAGCAGCGG
CACTACCGACGCCAACGGCAACCCGCGTATTTCCACGCGCTCGGTCGCTACGCAAGTTGCGGCGCAGAGTGGTCAGACGG
TGTTGCTGGGCGGATTGATCAAGCAGGATAACGCGGAGACGGTCAACGCCGTGCCGTACCTTGGGCGCATCCCCGGTCTG
CGCTGGTTGTTTGGCAATACCAGCAAATCCAAGGACCGCACCGAGCTGATCGTGCTGATCACGCCAAGGGTCATCACCAG
CAGCAGCCAGGCGCGCCAGGTGACGGATGATTACCGTCAGCAGATGCAACTGCTCAAGCCCGAGGTCTCGCGGACCAGCA
TGCAGAACTGA

Upstream 100 bases:

>100_bases
AACTCGATGACCGCACGCAAGTCCTGCGCCTGCCCGCGCTGCGTCTGCCGCCGCCGTCGAATACACCGCCGATTACCTTA
ACCAACGATTCCACCCTGTG

Downstream 100 bases:

>100_bases
CGCCGGTTGATTGCTGCCACCACGCCCACTCACGACGCTGCCTTTGGGCGGCGTCAAACAGAGGTCATGAACAGATGCTG
AAATTTTTCGCTGCCTTACT

Product: type II and III secretion system protein:NolW-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 776; Mature: 775

Protein sequence:

>776_residues
MGTFSGVPAIATLRTPLLCLATAVALGGCASQSDTLDPDNGMLQEALQGTGSQRPPVDPRSERPPVEPPSQQTTSSPQRQ
IIKGNQRFIRQPAAAPAARQAETGDIVFNFTNQPIQAVINSIMGDLLHENYSIAQGVKGDVSFSTSKPVNKQQALSILET
LLSWTDNAMIKQGNRYVILPSNQAVAGKLVPEMRVAQPSAGMSARLFPLRYISATEMQKLLKPFARENAFLLVDPARNVL
SLAGTPEELANYQDTIDTFDVDWLKGMSVGVFGLQRASVGELMPELQKMFGPESGMPLAGMVRFLPIERTNSVVAISSQP
EYLHEVGEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYLRQIYGTGAIKDDSPAKVAPGLRTTTLSSLNSSGGSGVGGM
SSSNGLGSNGGGMGNGGGFGNSQSMNNSQNSADSESEGDDQGGGDSDSDSASQDGSGSSGASKSLDASTRITAQKSSNQL
LVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALA
STDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNTGTTLSSVEYVQTGVIL
DVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGL
RWLFGNTSKSKDRTELIVLITPRVITSSSQARQVTDDYRQQMQLLKPEVSRTSMQN

Sequences:

>Translated_776_residues
MGTFSGVPAIATLRTPLLCLATAVALGGCASQSDTLDPDNGMLQEALQGTGSQRPPVDPRSERPPVEPPSQQTTSSPQRQ
IIKGNQRFIRQPAAAPAARQAETGDIVFNFTNQPIQAVINSIMGDLLHENYSIAQGVKGDVSFSTSKPVNKQQALSILET
LLSWTDNAMIKQGNRYVILPSNQAVAGKLVPEMRVAQPSAGMSARLFPLRYISATEMQKLLKPFARENAFLLVDPARNVL
SLAGTPEELANYQDTIDTFDVDWLKGMSVGVFGLQRASVGELMPELQKMFGPESGMPLAGMVRFLPIERTNSVVAISSQP
EYLHEVGEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYLRQIYGTGAIKDDSPAKVAPGLRTTTLSSLNSSGGSGVGGM
SSSNGLGSNGGGMGNGGGFGNSQSMNNSQNSADSESEGDDQGGGDSDSDSASQDGSGSSGASKSLDASTRITAQKSSNQL
LVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALA
STDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNTGTTLSSVEYVQTGVIL
DVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGL
RWLFGNTSKSKDRTELIVLITPRVITSSSQARQVTDDYRQQMQLLKPEVSRTSMQN
>Mature_775_residues
GTFSGVPAIATLRTPLLCLATAVALGGCASQSDTLDPDNGMLQEALQGTGSQRPPVDPRSERPPVEPPSQQTTSSPQRQI
IKGNQRFIRQPAAAPAARQAETGDIVFNFTNQPIQAVINSIMGDLLHENYSIAQGVKGDVSFSTSKPVNKQQALSILETL
LSWTDNAMIKQGNRYVILPSNQAVAGKLVPEMRVAQPSAGMSARLFPLRYISATEMQKLLKPFARENAFLLVDPARNVLS
LAGTPEELANYQDTIDTFDVDWLKGMSVGVFGLQRASVGELMPELQKMFGPESGMPLAGMVRFLPIERTNSVVAISSQPE
YLHEVGEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYLRQIYGTGAIKDDSPAKVAPGLRTTTLSSLNSSGGSGVGGMS
SSNGLGSNGGGMGNGGGFGNSQSMNNSQNSADSESEGDDQGGGDSDSDSASQDGSGSSGASKSLDASTRITAQKSSNQLL
VRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAS
TDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNTGTTLSSVEYVQTGVILD
VVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLR
WLFGNTSKSKDRTELIVLITPRVITSSSQARQVTDDYRQQMQLLKPEVSRTSMQN

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=348, Percent_Identity=29.3103448275862, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1789793, Length=302, Percent_Identity=29.4701986754967, Blast_Score=102, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 82427; Mature: 82296

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTFSGVPAIATLRTPLLCLATAVALGGCASQSDTLDPDNGMLQEALQGTGSQRPPVDPR
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
SERPPVEPPSQQTTSSPQRQIIKGNQRFIRQPAAAPAARQAETGDIVFNFTNQPIQAVIN
CCCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHH
SIMGDLLHENYSIAQGVKGDVSFSTSKPVNKQQALSILETLLSWTDNAMIKQGNRYVILP
HHHHHHHHCCCHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCHHEECCCEEEEEE
SNQAVAGKLVPEMRVAQPSAGMSARLFPLRYISATEMQKLLKPFARENAFLLVDPARNVL
CCCCCHHHCCCCHHCCCCCCCCCEEEEHEEHHCHHHHHHHHHHHHHCCCEEEECCCCHHH
SLAGTPEELANYQDTIDTFDVDWLKGMSVGVFGLQRASVGELMPELQKMFGPESGMPLAG
HHCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCHHH
MVRFLPIERTNSVVAISSQPEYLHEVGEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYL
HHHEEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH
RQIYGTGAIKDDSPAKVAPGLRTTTLSSLNSSGGSGVGGMSSSNGLGSNGGGMGNGGGFG
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NSQSMNNSQNSADSESEGDDQGGGDSDSDSASQDGSGSSGASKSLDASTRITAQKSSNQL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEE
LVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTG
EEEECCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCC
NVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHCCCCEEEEECCEEEEECC
QQAQIQVGDNIPISQTSINTNTNTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQV
CCEEEEECCCCCCCCEECCCCCCCCCCHHHHHHHHHCEEEEECCCCCCCCEEEEEHHHHH
SDADSSGTTDANGNPRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECEEECCCCCCEECCCHHHCCCCC
RWLFGNTSKSKDRTELIVLITPRVITSSSQARQVTDDYRQQMQLLKPEVSRTSMQN
EEEECCCCCCCCCCEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC
>Mature Secondary Structure 
GTFSGVPAIATLRTPLLCLATAVALGGCASQSDTLDPDNGMLQEALQGTGSQRPPVDPR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
SERPPVEPPSQQTTSSPQRQIIKGNQRFIRQPAAAPAARQAETGDIVFNFTNQPIQAVIN
CCCCCCCCCCCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHH
SIMGDLLHENYSIAQGVKGDVSFSTSKPVNKQQALSILETLLSWTDNAMIKQGNRYVILP
HHHHHHHHCCCHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCHHEECCCEEEEEE
SNQAVAGKLVPEMRVAQPSAGMSARLFPLRYISATEMQKLLKPFARENAFLLVDPARNVL
CCCCCHHHCCCCHHCCCCCCCCCEEEEHEEHHCHHHHHHHHHHHHHCCCEEEECCCCHHH
SLAGTPEELANYQDTIDTFDVDWLKGMSVGVFGLQRASVGELMPELQKMFGPESGMPLAG
HHCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCHHH
MVRFLPIERTNSVVAISSQPEYLHEVGEWIHTIDEGGGNEPQMYVYDVRNMKATDLAKYL
HHHEEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHH
RQIYGTGAIKDDSPAKVAPGLRTTTLSSLNSSGGSGVGGMSSSNGLGSNGGGMGNGGGFG
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NSQSMNNSQNSADSESEGDDQGGGDSDSDSASQDGSGSSGASKSLDASTRITAQKSSNQL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEE
LVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTG
EEEECCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCHHHHHHHHCCCCCCCC
NVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNN
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHCCCCEEEEECCEEEEECC
QQAQIQVGDNIPISQTSINTNTNTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQV
CCEEEEECCCCCCCCEECCCCCCCCCCHHHHHHHHHCEEEEECCCCCCCCEEEEEHHHHH
SDADSSGTTDANGNPRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGL
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECEEECCCCCCEECCCHHHCCCCC
RWLFGNTSKSKDRTELIVLITPRVITSSSQARQVTDDYRQQMQLLKPEVSRTSMQN
EEEECCCCCCCCCCEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]